Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 0.0e+00 1569.7 917 100.0
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 0.0e+00 1449.1 954 91.2
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 0.0e+00 1438.7 955 89.5
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 0.0e+00 1429.1 954 87.8
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 0.0e+00 1400.2 954 89.8
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 0.0e+00 1344.3 962 84.6
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 4.5e-284 981.5 934 65.3
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 3.5e-281 971.8 967 63.0
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 5.9e-260 901.4 951 58.9
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 2.3e-248 862.8 957 57.1
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 3.1e-245 852.4 959 56.9
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 6.8e-240 834.7 964 57.0
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.2e-239 833.9 961 57.0
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 4.8e-238 828.6 965 56.6
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.3e-238 828.2 956 56.1
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.3e-238 828.2 955 55.7
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 1.4e-237 827.0 956 55.9
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 1.0e-235 820.8 907 55.1
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 3.8e-235 818.9 948 55.3
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 3.0e-232 809.3 947 54.5
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.8e-230 802.7 951 55.7
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 2.7e-228 796.2 946 54.5
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.7e-227 793.5 948 54.4
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 2.9e-227 792.7 1011 52.9
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.0e-224 784.3 868 56.8
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 5.2e-224 781.9 968 55.0
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.2e-223 780.8 900 55.2
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 2.2e-222 776.5 960 53.3
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 4.1e-221 772.3 957 53.2
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 1.5e-218 763.8 961 53.1
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 1.6e-217 760.4 943 53.9
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 8.9e-216 754.6 947 53.4
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 2.0e-215 753.4 958 52.7
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 4.4e-215 752.3 955 51.7
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 4.4e-215 752.3 962 52.3
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 7.5e-215 751.5 958 50.9
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 2.9e-214 749.6 960 54.6
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 6.4e-214 748.4 931 50.5
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 4.1e-213 745.7 948 51.8
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.6e-212 743.8 956 51.2
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 6.0e-212 741.9 1078 47.4
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 1.0e-211 741.1 929 50.8
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 3.9e-211 739.2 953 51.4
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 2.1e-209 733.4 944 52.0
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 8.1e-209 731.5 963 50.9
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 1.1e-208 731.1 896 52.9
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 3.1e-208 729.6 928 51.4
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 3.4e-207 726.1 920 50.3
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 1.7e-206 723.8 948 51.3
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 2.2e-206 723.4 962 50.3
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 1.1e-205 721.1 924 50.8
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 1.4e-205 720.7 964 52.4
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.9e-205 720.3 924 50.4
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 3.2e-205 719.5 955 50.4
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 4.1e-205 719.2 926 50.8
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 4.6e-204 715.7 919 53.2
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 1.0e-203 714.5 923 50.7
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 1.0e-203 714.5 962 49.9
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 1.3e-203 714.1 963 49.9
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.0e-203 713.0 972 49.5
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.9e-203 712.6 840 54.8
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 7.3e-202 708.4 922 49.9
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.2e-201 707.6 828 57.4
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.8e-201 706.4 950 51.4
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 6.2e-201 705.3 937 51.5
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 1.8e-200 703.7 962 49.3
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 1.8e-200 703.7 934 51.4
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 6.8e-200 701.8 932 51.2
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.2e-199 701.0 932 50.3
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 7.6e-199 698.4 952 50.0
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 2.2e-198 696.8 894 53.1
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 4.9e-198 695.7 958 48.6
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 1.9e-197 693.7 979 48.0
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 2.1e-196 690.3 966 49.8
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 3.5e-196 689.5 923 51.4
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.6e-196 689.1 972 47.8
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 3.0e-195 686.4 953 51.2
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.5e-194 683.3 934 49.0
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.2e-193 681.0 917 50.9
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 1.6e-193 680.6 926 50.1
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 4.9e-190 669.1 904 47.6
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 7.1e-189 665.2 939 47.0
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 7.8e-188 661.8 942 50.5
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 5.1e-187 659.1 956 49.3
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 6.6e-187 658.7 953 48.6
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 9.6e-186 654.8 954 47.2
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 1.6e-185 654.1 937 48.0
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.9e-181 640.6 960 46.2
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 2.5e-178 630.2 906 46.8
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 4.3e-178 629.4 1030 45.6
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.1e-176 623.2 877 45.0
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 8.4e-174 615.1 938 45.9
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 8.7e-171 605.1 976 44.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 1.5e-162 577.8 904 45.0
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 1.5e-154 551.2 444 63.1
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 8.5e-142 508.8 394 67.3
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.4e-141 508.1 969 39.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 1.3e-134 485.0 698 48.7
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 8.0e-132 475.7 932 39.2
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.4e-131 474.9 969 38.6
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 8.3e-121 439.1 619 47.2
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 2.0e-119 434.5 574 52.1
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 2.3e-99 367.9 523 53.7
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.5e-98 365.2 893 35.5
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.4e-88 332.0 623 45.6
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.8e-87 326.2 266 64.7
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 8.9e-83 312.8 620 39.5
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.1e-80 303.1 493 43.6
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 7.9e-63 246.5 263 51.3
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.8e-60 238.0 264 50.0
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.1e-59 236.1 338 54.7
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.6e-52 212.2 193 57.5
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 9.7e-45 186.4 946 26.7
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.0e-42 178.7 407 38.8
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 2.2e-33 148.7 315 39.4
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 9.4e-32 143.3 244 42.6
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.8e-30 139.0 325 38.2
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 2.0e-29 135.6 99 70.7
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 2.0e-26 125.6 114 62.3
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.3e-25 122.9 110 62.7
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.5e-24 118.6 277 42.6
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 4.2e-24 117.9 89 66.3
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 7.2e-24 117.1 346 35.5
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 2.1e-23 115.5 89 66.3
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 2.1e-23 115.5 1136 24.4
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 6.1e-23 114.0 373 32.7
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 5.7e-21 107.5 718 25.3
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 9.7e-21 106.7 70 80.0
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.8e-20 104.4 113 54.0
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 1.3e-17 96.3 58 86.2
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 2.1e-15 89.0 668 23.8
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 4.8e-12 77.8 205 29.8
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 2.4e-11 75.5 348 31.6
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.6e-10 72.8 99 53.5
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.5e-10 71.2 104 42.3
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.5e-09 67.4 136 38.2
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 8.5e-09 67.0 99 51.5
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 8.5e-09 67.0 99 51.5
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 6.1e-07 60.8 117 38.5
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.0e-06 58.5 47 66.0
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.0e-06 58.2 69 50.7
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 8.8e-06 57.0 90 42.2


User provided reference genes

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