Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0890 Fragaria x ananassa HOM05D003260 ORTHO05D003651 7.2e-52 206.8 95 100.0
FAN17G1896 Fragaria x ananassa HOM05D003260 ORTHO05D003651 4.2e-28 127.9 62 95.2
FAN22G0635 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.6e-27 125.9 60 96.7
RcHm_v2.0_Chr4g0421311 Rosa chinensis HOM05D003260 ORTHO05D003651 2.7e-27 125.2 62 91.9
FvH4_4g17380 Fragaria vesca HOM05D003260 ORTHO05D003651 6.1e-27 124.0 62 91.9
FAN12G0747 Fragaria x ananassa HOM05D003260 ORTHO05D003651 6.1e-27 124.0 62 91.9
FAN12G1680 Fragaria x ananassa HOM05D003260 ORTHO05D003651 6.1e-27 124.0 62 91.9
RcHm_v2.0_Chr2g0123761 Rosa chinensis HOM05D003260 ORTHO05D003651 6.1e-27 124.0 62 90.3
FAN23G1699 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.0e-26 123.2 62 88.7
FAN28G1362 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.0e-26 123.2 62 88.7
FvH4_1g25590 Fragaria vesca HOM05D003260 ORTHO05D003651 1.8e-26 122.5 62 88.7
FAN19G0011 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.8e-26 122.5 62 88.7
MD13G1172600 Malus domestica HOM05D003260 ORTHO05D003651 5.2e-26 120.9 62 87.1
MD16G1174000 Malus domestica HOM05D003260 ORTHO05D003651 5.2e-26 120.9 62 87.1
Eucgr.B01272 Eucalyptus grandis HOM05D003260 ORTHO05D003651 7.5e-25 117.1 65 80.0
Eucgr.L01655 Eucalyptus grandis HOM05D003260 ORTHO05D003651 7.5e-25 117.1 65 80.0
Aqoxy2G03084 Aquilegia oxysepala HOM05D003260 ORTHO05D003651 6.3e-24 114.0 100 56.0
CSS0013073 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 8.2e-24 113.6 60 81.7
CSS0024611 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 8.2e-24 113.6 60 81.7
Duzib212G0515 Durio zibethinus HOM05D003260 ORTHO05D003651 8.2e-24 113.6 60 83.3
Thecc.04G279100 Theobroma cacao HOM05D003260 ORTHO05D003651 8.2e-24 113.6 60 85.0
COL.COLO4_13918 Corchorus olitorius HOM05D003260 ORTHO05D003651 1.8e-23 112.5 60 85.0
TAR633G2100 Trochodendron aralioides HOM05D003260 ORTHO05D003651 1.8e-23 112.5 102 55.9
Gohir.A09G062100 Gossypium hirsutum HOM05D003260 ORTHO05D003651 2.4e-23 112.1 60 83.3
PSO170G5597 Papaver somniferum HOM05D003260 ORTHO05D003651 2.4e-23 112.1 101 58.4
Gohir.D02G052400 Gossypium hirsutum HOM05D003260 ORTHO05D003651 3.1e-23 111.7 60 85.0
Actinidia14317 Actinidia chinensis HOM05D003260 ORTHO05D003651 5.3e-23 110.9 74 71.6
Gorai.006G075600 Gossypium raimondii HOM05D003260 ORTHO05D003651 5.3e-23 110.9 60 83.3
Potri.010G019500 Populus trichocarpa HOM05D003260 ORTHO05D003651 5.3e-23 110.9 60 81.7
CDE05G3633 Ceratophyllum demersum HOM05D003260 ORTHO05D003651 1.2e-22 109.8 60 76.7
Duzib052G0697 Durio zibethinus HOM05D003260 ORTHO05D003651 1.2e-22 109.8 60 81.7
Gohir.D09G061000 Gossypium hirsutum HOM05D003260 ORTHO05D003651 1.2e-22 109.8 60 81.7
Nn4g25978 Nelumbo nucifera HOM05D003260 ORTHO05D003651 1.2e-22 109.8 59 83.1
Nitab4.5_0002986g0110 Nicotiana tabacum HOM05D003260 ORTHO05D003651 1.6e-22 109.4 64 78.1
Prupe.1G140800 Prunus persica HOM05D003260 ORTHO05D003651 1.6e-22 109.4 57 86.0
Gorai.005G057700 Gossypium raimondii HOM05D003260 ORTHO05D003651 2.0e-22 109.0 60 83.3
Cfa015352 Carpinus fangiana HOM05D003260 ORTHO05D003651 2.7e-22 108.6 60 81.7
Ciclev10005298m.g Citrus clementina HOM05D003260 ORTHO05D003651 2.7e-22 108.6 60 80.0
Haze_01252 Corylus avellana HOM05D003260 ORTHO05D003651 2.7e-22 108.6 60 81.7
Gohir.A02G046700 Gossypium hirsutum HOM05D003260 ORTHO05D003651 2.7e-22 108.6 60 81.7
Manes.03G191800 Manihot esculenta HOM05D003260 ORTHO05D003651 2.7e-22 108.6 60 76.7
Actinidia23419 Actinidia chinensis HOM05D003260 ORTHO05D003651 4.5e-22 107.8 60 78.3
Manes.15G015900 Manihot esculenta HOM05D003260 ORTHO05D003651 4.5e-22 107.8 60 76.7
Nitab4.5_0000829g0170 Nicotiana tabacum HOM05D003260 ORTHO05D003651 4.5e-22 107.8 61 80.3
GSVIVG01017792001 Vitis vinifera HOM05D003260 ORTHO05D003651 4.5e-22 107.8 60 80.0
Actinidia40234 Actinidia chinensis HOM05D003260 ORTHO05D003651 7.7e-22 107.1 60 76.7
TWI73G0946 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 7.7e-22 107.1 60 78.3
Cc03_g02230 Coffea canephora HOM05D003260 ORTHO05D003651 1.0e-21 106.7 60 80.0
Eucgr.H03843 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.0e-21 106.7 60 80.0
Eucgr.H03854 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.0e-21 106.7 60 80.0
Hund20592 Selenicereus undatus HOM05D003260 ORTHO05D003651 1.0e-21 106.7 60 76.7
TWI09G1509 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 1.0e-21 106.7 60 78.3
TAR636G0688 Trochodendron aralioides HOM05D003260 ORTHO05D003651 1.0e-21 106.7 60 81.7
LjContig00389g0009808 Lotus japonicus HOM05D003260 ORTHO05D003651 1.3e-21 106.3 62 79.0
Nn3g21340 Nelumbo nucifera HOM05D003260 ORTHO05D003651 1.3e-21 106.3 60 76.7
Solyc01g067380.4 Solanum lycopersicum HOM05D003260 ORTHO05D003651 1.3e-21 106.3 64 75.0
Sopen01g029270 Solanum pennellii HOM05D003260 ORTHO05D003651 1.3e-21 106.3 64 75.0
Cpa.g.sc16.128 Carica papaya HOM05D003260 ORTHO05D003651 1.7e-21 105.9 62 71.0
PGR004G1032 Punica granatum HOM05D003260 ORTHO05D003651 1.7e-21 105.9 60 78.3
PGR031G2101 Punica granatum HOM05D003260 ORTHO05D003651 1.7e-21 105.9 60 81.7
THA.LOC104802724 Tarenaya hassleriana HOM05D003260 ORTHO05D003651 1.7e-21 105.9 60 75.0
vmacro08190 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 1.7e-21 105.9 60 78.3
CSS0042129 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 2.2e-21 105.5 60 76.7
Rhsim04G0217500 Rhododendron simsii HOM05D003260 ORTHO05D003651 2.2e-21 105.5 60 78.3
Sabra10G0010800 Salix brachista HOM05D003260 ORTHO05D003651 2.2e-21 105.5 60 76.7
Sed0004895 Sechium edule HOM05D003260 ORTHO05D003651 2.2e-21 105.5 60 78.3
Cc11_g03960 Coffea canephora HOM05D003260 ORTHO05D003651 2.9e-21 105.1 60 80.0
Sopen01g029260 Solanum pennellii HOM05D003260 ORTHO05D003651 2.9e-21 105.1 64 73.4
Actinidia14316 Actinidia chinensis HOM05D003260 ORTHO05D003651 3.8e-21 104.8 60 78.3
CsaV3_3G014240 Cucumis sativus L. HOM05D003260 ORTHO05D003651 3.8e-21 104.8 60 78.3
DCAR_002451 Daucus carota HOM05D003260 ORTHO05D003651 3.8e-21 104.8 58 79.3
Sc13g0003570 Simmondsia chinensis HOM05D003260 ORTHO05D003651 3.8e-21 104.8 60 76.7
THA.LOC104827117 Tarenaya hassleriana HOM05D003260 ORTHO05D003651 3.8e-21 104.8 62 72.6
ATR0706G289 Amborella trichopoda HOM05D003260 ORTHO05D003651 5.0e-21 104.4 60 78.3
AT5G18640 Arabidopsis thaliana HOM05D003260 ORTHO05D003651 6.5e-21 104.0 63 76.2
CANSAT78G2310 Cannabis sativa HOM05D003260 ORTHO05D003651 6.5e-21 104.0 60 76.7
ClCG05G005890 Citrullus lanatus HOM05D003260 ORTHO05D003651 6.5e-21 104.0 60 76.7
Dinv38316 Davidia involucrata HOM05D003260 ORTHO05D003651 6.5e-21 104.0 60 76.7
Rhsim02G0012700 Rhododendron simsii HOM05D003260 ORTHO05D003651 6.5e-21 104.0 74 68.9
Solyc06g054550.3 Solanum lycopersicum HOM05D003260 ORTHO05D003651 6.5e-21 104.0 60 78.3
PGSC0003DMG400030761 Solanum tuberosum HOM05D003260 ORTHO05D003651 6.5e-21 104.0 60 78.3
Lalb_Chr20g0118081 Lupinus albus HOM05D003260 ORTHO05D003651 8.5e-21 103.6 62 75.8
BcaB08g36656 Brassica carinata HOM05D003260 ORTHO05D003651 1.1e-20 103.2 63 74.6
A10p20930 Brassica napus HOM05D003260 ORTHO05D003651 1.1e-20 103.2 63 74.6
C09p57820 Brassica napus HOM05D003260 ORTHO05D003651 1.1e-20 103.2 63 74.6
BolC9t58652H Brassica oleracea HOM05D003260 ORTHO05D003651 1.1e-20 103.2 63 74.6
BraA10t44158Z Brassica rapa HOM05D003260 ORTHO05D003651 1.1e-20 103.2 63 74.6
CiPaw.02G085700 Carya illinoinensis HOM05D003260 ORTHO05D003651 1.1e-20 103.2 60 76.7
MELO3C006617.2 Cucumis melo HOM05D003260 ORTHO05D003651 1.1e-20 103.2 60 76.7
Phvul.006G162100 Phaseolus vulgaris HOM05D003260 ORTHO05D003651 1.1e-20 103.2 62 75.8
Sopen06g019620 Solanum pennellii HOM05D003260 ORTHO05D003651 1.1e-20 103.2 60 78.3
SGA_v2.0_scaffold62G21598 Striga asiatica HOM05D003260 ORTHO05D003651 1.1e-20 103.2 57 77.2
CAN.G256.11 Capsicum annuum HOM05D003260 ORTHO05D003651 1.5e-20 102.8 60 76.7
PGSC0003DMG400022655 Solanum tuberosum HOM05D003260 ORTHO05D003651 1.5e-20 102.8 64 71.9
TWI53G0545 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 1.5e-20 102.8 60 75.0
TWI53G1343 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 1.5e-20 102.8 60 75.0
AL6G29910 Arabidopsis lyrata HOM05D003260 ORTHO05D003651 1.9e-20 102.4 63 74.6
Glyma.13G215800 Glycine max HOM05D003260 ORTHO05D003651 1.9e-20 102.4 62 75.8
Glyma.15G097100 Glycine max HOM05D003260 ORTHO05D003651 1.9e-20 102.4 62 75.8
Peaxi162Scf00033g01320 Petunia axillaris HOM05D003260 ORTHO05D003651 1.9e-20 102.4 58 77.6
Sp6g25695 Schrenkiella parvula HOM05D003260 ORTHO05D003651 1.9e-20 102.4 63 73.0
Aa31LG11G10980 Aethionema arabicum HOM05D003260 ORTHO05D003651 2.5e-20 102.1 63 73.0
CARHR194370 Cardamine hirsuta HOM05D003260 ORTHO05D003651 2.5e-20 102.1 63 73.0
CARHR194390 Cardamine hirsuta HOM05D003260 ORTHO05D003651 2.5e-20 102.1 63 74.6
CiPaw.01G152200 Carya illinoinensis HOM05D003260 ORTHO05D003651 2.5e-20 102.1 60 75.0
Nitab4.5_0001459g0100 Nicotiana tabacum HOM05D003260 ORTHO05D003651 2.5e-20 102.1 58 77.6
Psat1g187440 Pisum sativum HOM05D003260 ORTHO05D003651 2.5e-20 102.1 62 74.2
TPR.G1488 Trifolium pratense HOM05D003260 ORTHO05D003651 2.5e-20 102.1 62 74.2
VMungo0540G0576 Vigna mungo HOM05D003260 ORTHO05D003651 2.5e-20 102.1 62 72.6
Carub.0006s1693 Capsella rubella HOM05D003260 ORTHO05D003651 3.2e-20 101.7 63 74.6
QL06p007594 Quercus lobata HOM05D003260 ORTHO05D003651 4.2e-20 101.3 60 75.0
Lj6A670G77 Lonicera japonica HOM05D003260 ORTHO05D003651 5.5e-20 100.9 58 75.9
AL6G29900 Arabidopsis lyrata HOM05D003260 ORTHO05D003651 7.2e-20 100.5 63 71.4
Eucgr.H03839 Eucalyptus grandis HOM05D003260 ORTHO05D003651 7.2e-20 100.5 60 76.7
TPR.G1524 Trifolium pratense HOM05D003260 ORTHO05D003651 7.2e-20 100.5 62 72.6
Carub.0006s1691 Capsella rubella HOM05D003260 ORTHO05D003651 9.4e-20 100.1 63 71.4
Peaxi162Scf00386g00812 Petunia axillaris HOM05D003260 ORTHO05D003651 9.4e-20 100.1 64 70.3
Ca_00565_v3 Cicer arietinum L. HOM05D003260 ORTHO05D003651 1.2e-19 99.8 62 72.6
DCAR_024550 Daucus carota HOM05D003260 ORTHO05D003651 1.2e-19 99.8 58 74.1
Medtr2g020020 Medicago truncatula HOM05D003260 ORTHO05D003651 1.2e-19 99.8 62 72.6
vmacro15254 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 1.2e-19 99.8 58 77.6
CAN.G556.1 Capsicum annuum HOM05D003260 ORTHO05D003651 1.6e-19 99.4 64 68.8
Thhalv10013982m.g Eutrema salsugineum HOM05D003260 ORTHO05D003651 1.6e-19 99.4 63 73.0
BraA02t05464Z Brassica rapa HOM05D003260 ORTHO05D003651 2.1e-19 99.0 64 70.3
Sp6g25700 Schrenkiella parvula HOM05D003260 ORTHO05D003651 2.1e-19 99.0 63 73.0
AT5G18630 Arabidopsis thaliana HOM05D003260 ORTHO05D003651 2.7e-19 98.6 63 69.8
A02p05060 Brassica napus HOM05D003260 ORTHO05D003651 2.7e-19 98.6 64 68.8
Lalb_Chr18g0055681 Lupinus albus HOM05D003260 ORTHO05D003651 2.7e-19 98.6 58 77.6
Nitab4.5_0001054g0020 Nicotiana tabacum HOM05D003260 ORTHO05D003651 2.7e-19 98.6 55 80.0
Migut.G00197 Erythranthe guttata HOM05D003260 ORTHO05D003651 3.6e-19 98.2 57 71.9
Thhalv10013941m.g Eutrema salsugineum HOM05D003260 ORTHO05D003651 3.6e-19 98.2 63 73.0
arahy.Tifrunner.gnm1.ann1.CF3NAW Arachis hypogaea HOM05D003260 ORTHO05D003651 4.7e-19 97.8 62 71.0
arahy.Tifrunner.gnm1.ann1.S8T7D3 Arachis hypogaea HOM05D003260 ORTHO05D003651 4.7e-19 97.8 62 71.0
Lj3C812T21 Lonicera japonica HOM05D003260 ORTHO05D003651 6.1e-19 97.4 58 72.4
Hund24917 Selenicereus undatus HOM05D003260 ORTHO05D003651 6.1e-19 97.4 60 68.3
BcaB05g23343 Brassica carinata HOM05D003260 ORTHO05D003651 1.0e-18 96.7 63 71.4
Sed0005192 Sechium edule HOM05D003260 ORTHO05D003651 1.0e-18 96.7 74 62.2
Zm00001eb141920 Zea mays HOM05D003260 ORTHO05D003651 1.0e-18 96.7 60 70.0
BolC2t06910H Brassica oleracea HOM05D003260 ORTHO05D003651 1.4e-18 96.3 61 73.8
EL10Ac3g06566 Beta vulgaris HOM05D003260 ORTHO05D003651 3.0e-18 95.1 60 65.0
Hma1.2p1_0078F.1_g040770 Hydrangea macrophylla HOM05D003260 ORTHO05D003651 3.0e-18 95.1 60 70.0
MSTRG.24781 Avicennia marina HOM05D003260 ORTHO05D003651 4.0e-18 94.7 58 69.0
BcaC03g13614 Brassica carinata HOM05D003260 ORTHO05D003651 4.0e-18 94.7 64 70.3
C02p10110 Brassica napus HOM05D003260 ORTHO05D003651 4.0e-18 94.7 64 70.3
BolC2t06911H Brassica oleracea HOM05D003260 ORTHO05D003651 4.0e-18 94.7 64 70.3
BraA02t05463Z Brassica rapa HOM05D003260 ORTHO05D003651 4.0e-18 94.7 59 74.6
AUR62041197 Chenopodium quinoa HOM05D003260 ORTHO05D003651 5.2e-18 94.4 59 64.4
Os05g0372400 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 5.2e-18 94.4 74 60.8
Os01g0936200 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 6.8e-18 94.0 60 65.0
MELO3C021361.2 Cucumis melo HOM05D003260 ORTHO05D003651 1.5e-17 92.8 60 71.7
CsaV3_6G005740 Cucumis sativus L. HOM05D003260 ORTHO05D003651 1.5e-17 92.8 60 71.7
Eucgr.H03849 Eucalyptus grandis HOM05D003260 ORTHO05D003651 2.0e-17 92.4 58 70.7
HPP92_003149 Vanilla planifolia HOM05D003260 ORTHO05D003651 2.0e-17 92.4 60 65.0
Oeu044781.1 Olea europaea HOM05D003260 ORTHO05D003651 2.6e-17 92.0 56 71.4
ClCG06G005380 Citrullus lanatus HOM05D003260 ORTHO05D003651 7.5e-17 90.5 60 70.0
HanXRQChr17g0539071 Helianthus annuus HOM05D003260 ORTHO05D003651 9.8e-17 90.1 56 69.6
Lsat_1_v5_gn_3_25841 Lactuca sativa HOM05D003260 ORTHO05D003651 9.8e-17 90.1 56 69.6
MSTRG.10069 Avicennia marina HOM05D003260 ORTHO05D003651 1.3e-16 89.7 55 69.1
Zm00001eb285400 Zea mays HOM05D003260 ORTHO05D003651 1.7e-16 89.4 60 65.0
Actinidia08303 Actinidia chinensis HOM05D003260 ORTHO05D003651 4.8e-16 87.8 48 79.2
SalBow2G1465 Salvia bowleyana HOM05D003260 ORTHO05D003651 4.8e-16 87.8 57 64.9
Zm00001eb165770 Zea mays HOM05D003260 ORTHO05D003651 6.3e-16 87.4 60 65.0
BcaB05g23344 Brassica carinata HOM05D003260 ORTHO05D003651 1.4e-15 86.3 59 69.5
Os11g0655800 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 1.4e-15 86.3 60 65.0
HanXRQChr06g0174191 Helianthus annuus HOM05D003260 ORTHO05D003651 1.8e-15 85.9 56 67.9
HanXRQChr01g0003091 Helianthus annuus HOM05D003260 ORTHO05D003651 2.4e-15 85.5 54 70.4
AUR62043024 Chenopodium quinoa HOM05D003260 ORTHO05D003651 3.1e-15 85.1 56 60.7
Os07g0668700 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 7.0e-15 84.0 60 60.0
ECA246G1380 Erigeron canadensis HOM05D003260 ORTHO05D003651 1.6e-14 82.8 53 67.9
Eucgr.L03707 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.6e-14 82.8 58 67.2
Zm00001eb330150 Zea mays HOM05D003260 ORTHO05D003651 1.6e-14 82.8 58 62.1
Zm00001eb016740 Zea mays HOM05D003260 ORTHO05D003651 2.0e-14 82.4 58 60.3
HanXRQChr11g0349251 Helianthus annuus HOM05D003260 ORTHO05D003651 2.7e-14 82.0 55 65.5
Pp3c5_26430 Physcomitrium patens HOM05D003260 ORTHO05D003651 7.7e-14 80.5 56 58.9
Pp3c25_13720 Physcomitrium patens HOM05D003260 ORTHO05D003651 1.0e-13 80.1 56 60.7
Pp3c7_2230 Physcomitrium patens HOM05D003260 ORTHO05D003651 1.0e-13 80.1 58 60.3
SMO115G0037 Selaginella moellendorffii HOM05D003260 ORTHO05D003651 1.3e-13 79.7 58 63.8
HanXRQChr10g0288341 Helianthus annuus HOM05D003260 ORTHO05D003651 2.9e-13 78.6 56 64.3
AagrBONN_evm.TU.Sc2ySwM_344.569 Anthoceros agrestis HOM05D003260 ORTHO05D003651 3.8e-13 78.2 56 66.1
Mapoly0030s0070 Marchantia polymorpha HOM05D003260 ORTHO05D003651 1.5e-12 76.3 56 60.7
SMO340G0303 Selaginella moellendorffii HOM05D003260 ORTHO05D003651 1.9e-12 75.9 58 58.6
HanXRQChr12g0381381 Helianthus annuus HOM05D003260 ORTHO05D003651 5.2e-10 67.8 48 62.5
Zm00001eb266000 Zea mays HOM05D003260 ORTHO05D003651 2.0e-09 65.9 66 48.5
Eucgr.H03825 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.7e-08 62.8 42 69.0
CBR_g32343 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-08 61.6 57 49.1
Zm00001eb233360 Zea mays HOM05D003260 ORTHO05D003651 2.4e-07 58.9 55 49.1
Zm00001eb339690 Zea mays HOM05D003260 ORTHO05D003651 2.4e-07 58.9 54 50.0


User provided reference genes

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