Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.4e-81 306.2 149 100.0
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 4.8e-71 271.2 145 93.8
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 4.8e-71 271.2 145 93.8
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 4.8e-71 271.2 145 93.8
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 5.4e-70 267.7 145 91.0
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 1.0e-68 263.5 145 90.3
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 2.9e-68 261.9 145 89.7
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.5e-67 259.6 152 83.6
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 4.2e-67 258.1 145 88.3
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 7.2e-67 257.3 144 88.2
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 9.5e-67 256.9 145 88.3
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 2.8e-66 255.4 145 86.2
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 4.7e-66 254.6 145 86.9
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 4.7e-66 254.6 145 86.9
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 8.0e-66 253.8 145 85.5
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.8e-65 252.7 145 85.5
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 2.3e-65 252.3 145 85.5
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 2.3e-65 252.3 145 86.2
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 3.0e-65 251.9 145 86.2
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.0e-65 251.9 145 85.5
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 5.2e-65 251.1 145 86.2
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 5.2e-65 251.1 145 83.4
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 5.2e-65 251.1 145 86.2
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 5.2e-65 251.1 145 84.8
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 6.8e-65 250.8 145 85.5
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 6.8e-65 250.8 145 84.8
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 1.2e-64 250.0 145 82.8
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 1.5e-64 249.6 145 84.1
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 2.0e-64 249.2 145 84.1
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 2.0e-64 249.2 145 84.8
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 2.0e-64 249.2 145 84.1
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 2.0e-64 249.2 151 84.1
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 2.0e-64 249.2 145 84.1
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 2.6e-64 248.8 145 84.8
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 2.6e-64 248.8 145 84.8
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 2.6e-64 248.8 145 84.8
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 3.4e-64 248.4 145 84.1
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 4.4e-64 248.1 145 84.1
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 4.4e-64 248.1 145 83.4
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 4.4e-64 248.1 145 83.4
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.4e-64 248.1 145 84.8
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 5.7e-64 247.7 145 83.4
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 5.7e-64 247.7 144 84.7
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 7.5e-64 247.3 145 84.1
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 7.5e-64 247.3 145 84.1
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 9.8e-64 246.9 145 83.4
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 9.8e-64 246.9 145 83.4
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.7e-63 246.1 145 84.1
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 1.7e-63 246.1 145 83.4
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 1.7e-63 246.1 145 83.4
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 1.7e-63 246.1 145 84.1
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 2.2e-63 245.7 144 84.0
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.2e-63 245.7 145 83.4
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 2.8e-63 245.4 145 84.1
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 2.8e-63 245.4 145 84.1
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 4.9e-63 244.6 145 83.4
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 6.3e-63 244.2 145 82.8
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 6.3e-63 244.2 145 82.8
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 6.3e-63 244.2 145 82.8
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 6.3e-63 244.2 145 82.1
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.1e-62 243.4 145 83.4
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.1e-62 243.4 145 84.1
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 1.4e-62 243.0 145 82.8
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 2.4e-62 242.3 145 82.1
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 2.4e-62 242.3 145 82.8
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 2.4e-62 242.3 145 82.8
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 3.1e-62 241.9 145 80.0
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 7.0e-62 240.7 145 80.7
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 7.0e-62 240.7 145 80.7
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 9.2e-62 240.4 191 67.0
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 1.6e-61 239.6 140 83.6
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 2.0e-61 239.2 145 79.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 2.7e-61 238.8 145 80.7
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 4.5e-61 238.0 145 79.3
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.0e-60 236.9 145 78.6
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 1.0e-60 236.9 145 78.6
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 1.7e-60 236.1 145 78.6
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.7e-60 236.1 145 78.6
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 1.7e-60 236.1 145 77.9
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 2.3e-60 235.7 145 80.0
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 3.8e-60 235.0 145 77.9
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 6.6e-60 234.2 145 77.9
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 8.6e-60 233.8 147 78.9
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 1.1e-59 233.4 145 80.7
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.3e-59 231.9 143 78.3
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 3.3e-59 231.9 145 77.9
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 4.3e-59 231.5 145 76.6
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 4.3e-59 231.5 145 76.6
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 4.3e-59 231.5 145 76.6
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 9.5e-59 230.3 145 75.9
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 9.5e-59 230.3 145 75.9
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 9.5e-59 230.3 145 75.9
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.6e-58 229.6 185 66.5
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 6.8e-57 224.2 127 85.8
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.2e-56 223.4 145 78.6
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 1.3e-55 219.9 145 76.6
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 2.2e-55 219.2 150 75.3
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.2e-55 219.2 145 72.4
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.2e-54 215.3 145 73.1
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 5.4e-54 214.5 145 72.4
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.9e-51 206.1 145 69.7
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 4.7e-50 201.4 120 83.3
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.4e-49 199.9 149 71.8
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 3.4e-48 195.3 128 72.7
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 1.7e-44 183.0 145 66.2
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 1.2e-37 160.2 159 56.0
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.5e-32 143.3 75 92.0
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 6.0e-29 131.3 87 72.4
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 4.0e-25 118.6 62 87.1
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 5.1e-20 101.7 116 45.7
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 2.0e-16 89.7 141 36.2
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 2.6e-16 89.4 46 84.8
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 1.4e-14 83.6 55 65.5
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 2.3e-12 76.3 51 72.5
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 7.4e-11 71.2 117 36.8
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 2.8e-10 69.3 116 36.2


User provided reference genes

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