Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0876 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.9e-51 204.9 102 100.0
FAN15G1318 Fragaria x ananassa HOM05D003313 ORTHO05D015668 4.1e-45 184.5 98 92.9
FAN15G2142 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.0e-44 182.2 102 88.2
FAN21G1344 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.2e-43 178.7 95 91.6
FAN02G4136 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.5e-42 176.0 99 88.9
FAN10G1842 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.1e-41 172.2 97 86.6
FvH4_1g29860 Fragaria vesca HOM05D003313 ORTHO05D015668 1.2e-28 129.8 73 89.0
FAN19G3111 Fragaria x ananassa HOM05D003313 ORTHO05D015668 8.6e-27 123.6 78 79.5
FAN05G0528 Fragaria x ananassa HOM05D003313 ORTHO05D015668 7.8e-20 100.5 72 72.2
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 2.6e-15 85.5 58 75.9
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.6e-15 85.5 58 75.9
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.6e-15 85.5 58 75.9
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.6e-15 85.5 58 75.9
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 2.6e-15 85.5 58 75.9
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 2.6e-15 85.5 58 75.9
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 1.7e-14 82.8 58 72.4
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 2.2e-14 82.4 58 70.7
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 2.9e-14 82.0 58 70.7
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 3.7e-14 81.6 58 69.0
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 3.7e-14 81.6 58 69.0
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 3.7e-14 81.6 58 69.0
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 3.7e-14 81.6 58 69.0
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 4.9e-14 81.3 58 69.0
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 6.4e-14 80.9 58 69.0
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 6.4e-14 80.9 58 69.0
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 6.4e-14 80.9 54 72.2
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 6.4e-14 80.9 54 72.2
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 6.4e-14 80.9 58 67.2
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 8.3e-14 80.5 58 67.2
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 8.3e-14 80.5 62 64.5
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 1.1e-13 80.1 58 67.2
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 1.1e-13 80.1 58 67.2
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 1.1e-13 80.1 58 67.2
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 1.1e-13 80.1 58 69.0
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 1.1e-13 80.1 58 69.0
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 1.4e-13 79.7 58 67.2
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.8e-13 79.3 53 71.7
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.8e-13 79.3 53 71.7
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.8e-13 79.3 53 71.7
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 2.4e-13 79.0 58 67.2
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 2.4e-13 79.0 58 67.2
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 2.4e-13 79.0 58 69.0
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 2.4e-13 79.0 58 69.0
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 2.4e-13 79.0 54 70.4
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 3.2e-13 78.6 58 67.2
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 4.1e-13 78.2 58 67.2
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 4.1e-13 78.2 52 71.2
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.1e-13 78.2 58 67.2
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 4.1e-13 78.2 58 67.2
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 4.1e-13 78.2 54 68.5
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 4.1e-13 78.2 58 67.2
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 4.1e-13 78.2 58 65.5
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 4.1e-13 78.2 58 67.2
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 4.1e-13 78.2 58 67.2
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 5.4e-13 77.8 53 71.7
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 5.4e-13 77.8 52 71.2
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.4e-13 77.8 53 69.8
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 5.4e-13 77.8 53 69.8
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 5.4e-13 77.8 52 73.1
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 5.4e-13 77.8 58 67.2
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 7.0e-13 77.4 58 65.5
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 7.0e-13 77.4 58 65.5
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 7.0e-13 77.4 62 62.9
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 7.0e-13 77.4 53 71.7
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 7.0e-13 77.4 53 71.7
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 7.0e-13 77.4 53 71.7
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 7.0e-13 77.4 62 62.9
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 7.0e-13 77.4 62 62.9
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 9.2e-13 77.0 62 62.9
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 9.2e-13 77.0 58 63.8
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 9.2e-13 77.0 58 63.8
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 9.2e-13 77.0 62 62.9
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 9.2e-13 77.0 62 62.9
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 9.2e-13 77.0 52 71.2
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 9.2e-13 77.0 54 68.5
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 1.2e-12 76.6 58 65.5
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.2e-12 76.6 58 65.5
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.2e-12 76.6 58 65.5
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.2e-12 76.6 58 65.5
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.2e-12 76.6 58 63.8
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.2e-12 76.6 58 63.8
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 1.2e-12 76.6 52 71.2
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.2e-12 76.6 57 64.9
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 1.2e-12 76.6 57 64.9
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-12 76.3 62 61.3
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-12 76.3 62 61.3
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-12 76.3 62 61.3
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 1.6e-12 76.3 62 61.3
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 1.6e-12 76.3 62 61.3
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 1.6e-12 76.3 54 68.5
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 1.6e-12 76.3 54 66.7
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 1.6e-12 76.3 52 71.2
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 2.0e-12 75.9 53 67.9
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 2.0e-12 75.9 58 65.5
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 2.7e-12 75.5 58 62.1
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 2.7e-12 75.5 50 74.0
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 3.5e-12 75.1 54 66.7
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 3.5e-12 75.1 62 61.3
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 3.5e-12 75.1 62 61.3
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 3.5e-12 75.1 52 69.2
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 3.5e-12 75.1 52 69.2
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 4.6e-12 74.7 58 63.8
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 4.6e-12 74.7 52 69.2
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 6.0e-12 74.3 58 62.1
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 6.0e-12 74.3 54 64.8
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 6.0e-12 74.3 53 66.0
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 6.0e-12 74.3 53 66.0
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 6.0e-12 74.3 58 67.2
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 7.8e-12 73.9 54 66.7
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 7.8e-12 73.9 54 66.7
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 7.8e-12 73.9 54 64.8
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 7.8e-12 73.9 54 64.8
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 7.8e-12 73.9 54 64.8
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.0e-11 73.6 52 69.2
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 1.3e-11 73.2 58 62.1
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 1.3e-11 73.2 54 63.0
FAN27G1681 Fragaria x ananassa HOM05D003313 ORTHO05D015668 3.0e-11 72.0 54 70.4
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 3.0e-11 72.0 54 63.0
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 3.0e-11 72.0 54 63.0
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 3.9e-11 71.6 52 63.5
FAN15G0416 Fragaria x ananassa HOM05D020189 ORTHO05D015668 1.9e-10 69.3 43 81.4
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.9e-10 69.3 52 65.4
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 9.5e-10 67.0 51 64.7
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 1.2e-09 66.6 52 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 3.1e-08 62.0 55 50.9
FAN04G0942 Fragaria x ananassa HOM05D003313 ORTHO05D015668 8.9e-08 60.5 32 87.5
ATR0620G069 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.6e-07 58.9 44 63.6
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 6.4e-06 54.3 47 53.2


User provided reference genes

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