Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.1e-82 308.5 166 100.0
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 4.6e-70 268.1 146 99.3
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.6e-70 268.1 146 99.3
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.6e-70 268.1 146 98.6
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-69 266.5 146 97.3
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 2.3e-69 265.8 146 97.3
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 2.3e-69 265.8 146 97.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 7.3e-68 260.8 146 95.9
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 5.4e-63 244.6 150 88.7
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.9e-61 238.4 148 87.2
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 2.5e-60 235.7 144 84.0
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 3.3e-60 235.3 157 80.9
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 6.2e-59 231.1 141 87.2
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 4.0e-58 228.4 146 82.9
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 5.2e-58 228.0 142 84.5
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 5.2e-58 228.0 140 83.6
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 8.9e-58 227.3 160 76.9
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.2e-57 226.9 140 85.0
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.2e-57 226.9 144 81.2
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.5e-57 226.5 143 81.8
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.5e-57 226.5 140 84.3
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-57 226.1 138 85.5
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.6e-57 225.7 139 83.5
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 4.4e-57 224.9 140 82.9
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 5.8e-57 224.6 147 79.6
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 5.8e-57 224.6 140 83.6
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 5.8e-57 224.6 141 82.3
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 7.6e-57 224.2 135 85.2
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 7.6e-57 224.2 144 80.6
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 7.6e-57 224.2 151 78.8
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 7.6e-57 224.2 138 83.3
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 9.9e-57 223.8 151 79.5
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 9.9e-57 223.8 148 77.7
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 9.9e-57 223.8 144 81.9
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.7e-56 223.0 150 80.0
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.7e-56 223.0 140 83.6
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.9e-56 222.2 148 77.0
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 3.8e-56 221.9 144 79.2
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 3.8e-56 221.9 147 80.3
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 4.9e-56 221.5 142 81.7
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 4.9e-56 221.5 145 79.3
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 4.9e-56 221.5 143 80.4
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 6.4e-56 221.1 152 76.3
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 6.4e-56 221.1 145 80.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 6.4e-56 221.1 145 79.3
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 6.4e-56 221.1 147 78.9
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 6.4e-56 221.1 147 78.9
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 6.4e-56 221.1 145 79.3
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 8.4e-56 220.7 138 84.1
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 8.4e-56 220.7 146 80.8
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.1e-55 220.3 147 78.2
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.4e-55 219.9 144 79.9
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.4e-55 219.9 144 79.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.9e-55 219.5 149 77.9
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.9e-55 219.5 147 78.9
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.4e-55 219.2 144 80.6
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 3.2e-55 218.8 141 78.0
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 3.2e-55 218.8 144 79.9
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 3.2e-55 218.8 147 78.9
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 4.2e-55 218.4 160 73.1
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 4.2e-55 218.4 146 78.8
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 5.4e-55 218.0 148 79.7
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 5.4e-55 218.0 144 77.8
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.4e-55 218.0 145 77.9
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.4e-55 218.0 145 77.9
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 5.4e-55 218.0 148 78.4
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 7.1e-55 217.6 143 78.3
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 9.3e-55 217.2 145 77.2
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 9.3e-55 217.2 145 76.6
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.2e-54 216.9 149 75.8
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.2e-54 216.9 149 75.8
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.2e-54 216.9 141 77.3
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.6e-54 216.5 150 79.3
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.6e-54 216.5 150 78.7
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.6e-54 216.5 141 79.4
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.6e-54 216.5 145 77.2
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 2.1e-54 216.1 134 82.1
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.1e-54 216.1 141 79.4
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 2.7e-54 215.7 144 79.9
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 3.5e-54 215.3 141 77.3
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 3.5e-54 215.3 142 78.9
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 4.6e-54 214.9 146 77.4
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 6.0e-54 214.5 144 78.5
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.3e-53 213.4 146 76.0
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.7e-53 213.0 142 78.9
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.7e-53 213.0 143 77.6
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.9e-53 211.8 141 79.4
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 5.1e-53 211.5 145 75.9
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 8.7e-53 210.7 143 74.8
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.1e-52 210.3 143 76.9
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 1.5e-52 209.9 136 77.9
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.3e-52 208.8 141 75.9
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 4.3e-52 208.4 135 80.0
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 5.6e-52 208.0 136 76.5
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 7.3e-52 207.6 143 76.2
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.6e-51 206.5 142 77.5
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.6e-51 206.5 145 73.8
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 2.1e-51 206.1 136 77.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.1e-51 206.1 147 72.1
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 2.8e-51 205.7 136 77.9
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 3.6e-51 205.3 147 74.1
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.8e-50 203.0 145 73.8
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 9.0e-50 200.7 125 85.6
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 5.8e-49 198.0 140 72.1
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 9.9e-49 197.2 145 73.1
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.3e-48 196.8 151 70.9
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 2.2e-48 196.1 142 72.5
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 8.4e-48 194.1 139 74.1
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.9e-47 193.0 137 71.5
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 1.2e-46 190.3 116 82.8
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.6e-46 189.9 138 73.2
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.6e-46 189.9 138 73.2
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.6e-46 189.9 138 73.2
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 3.5e-46 188.7 144 71.5
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 3.5e-46 188.7 140 72.1
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 7.8e-46 187.6 139 69.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 1.0e-45 187.2 142 69.0
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 1.0e-45 187.2 140 71.4
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.3e-45 186.8 136 71.3
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 1.3e-45 186.8 137 70.8
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 2.3e-45 186.0 137 69.3
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 3.0e-45 185.7 140 70.0
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.9e-45 185.3 141 69.5
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.5e-44 183.3 147 64.6
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 2.1e-43 179.5 144 69.4
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.1e-43 179.5 135 68.9
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 2.8e-43 179.1 144 69.4
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 8.1e-43 177.6 138 71.0
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 8.1e-43 177.6 138 71.0
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.2e-41 173.7 137 63.5
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.5e-41 173.3 140 67.1
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.4e-41 172.2 119 78.2
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.1e-39 167.2 144 65.3
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 4.2e-39 165.2 134 64.2
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.1e-34 150.6 135 57.8
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.1e-34 149.1 132 60.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 7.6e-33 144.4 130 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.8e-32 142.1 128 56.2
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.9e-28 129.8 139 54.7
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.0e-25 119.8 109 62.4
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.1e-23 114.0 103 64.1
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.2e-22 110.5 95 66.3
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 3.5e-22 109.0 138 41.3
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 4.3e-20 102.1 138 39.9
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 4.2e-15 85.5 87 51.7
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 3.0e-13 79.3 50 80.0


User provided reference genes

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