Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.9e-55 217.6 114 100.0
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 4.6e-53 211.1 114 96.5
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.0e-52 209.9 114 96.5
FAN17G0917 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-46 189.5 103 95.1
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 1.1e-43 179.9 113 87.6
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.3e-43 177.2 103 94.2
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 3.0e-20 102.1 106 55.7
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 3.1e-17 92.0 120 50.8
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 9.9e-16 87.0 110 53.6
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 2.9e-15 85.5 124 46.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 3.8e-15 85.1 107 48.6
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.1e-14 83.6 121 47.1
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 7.1e-14 80.9 111 53.2
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.1e-13 79.3 112 47.3
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 3.5e-13 78.6 107 46.7
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 3.9e-12 75.1 120 43.3
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.9e-12 75.1 103 49.5
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 5.1e-12 74.7 105 50.5
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 6.7e-12 74.3 107 43.9
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 1.5e-11 73.2 104 47.1
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.5e-11 73.2 117 41.0
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 2.5e-11 72.4 66 56.1
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 2.5e-11 72.4 77 55.8
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.5e-11 72.4 115 43.5
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.3e-11 72.0 117 40.2
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 4.3e-11 71.6 63 58.7
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 7.4e-11 70.9 122 43.4
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 9.6e-11 70.5 103 45.6
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 1.3e-10 70.1 112 44.6
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.6e-10 69.7 102 46.1
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.1e-10 69.3 116 42.2
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 2.8e-10 68.9 113 42.5
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 2.8e-10 68.9 71 53.5
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 3.6e-10 68.6 111 45.9
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 3.6e-10 68.6 112 42.9
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 4.8e-10 68.2 107 42.1
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 4.8e-10 68.2 119 45.4
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 6.2e-10 67.8 63 55.6
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 6.2e-10 67.8 91 46.2
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 6.2e-10 67.8 114 44.7
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 1.1e-09 67.0 33 90.9
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.4e-09 66.6 106 44.3
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.8e-09 66.2 107 40.2
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.8e-09 66.2 59 54.2
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 1.8e-09 66.2 106 42.5
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 3.1e-09 65.5 67 53.7
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.1e-09 65.5 102 44.1
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 3.1e-09 65.5 44 65.9
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.1e-09 65.5 104 41.3
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 5.3e-09 64.7 104 41.3
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 5.3e-09 64.7 107 43.0
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 5.3e-09 64.7 102 41.2
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 9.0e-09 63.9 102 43.1
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 9.0e-09 63.9 110 41.8
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 2.0e-08 62.8 71 49.3
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 2.6e-08 62.4 38 78.9
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 2.6e-08 62.4 99 46.5
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 3.4e-08 62.0 107 43.0
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 3.4e-08 62.0 114 41.2
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 4.5e-08 61.6 128 39.8
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 4.5e-08 61.6 37 73.0
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 4.5e-08 61.6 37 73.0
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.8e-08 61.2 91 41.8
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 7.6e-08 60.8 38 68.4
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 1.7e-07 59.7 111 40.5
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 1.7e-07 59.7 37 70.3
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 2.2e-07 59.3 106 39.6
Solyc01g011105.1 Solanum lycopersicum HOM05D004965 ORTHO05D004401 2.2e-07 59.3 45 64.4
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 2.2e-07 59.3 49 63.3
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 2.9e-07 58.9 53 58.5
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 3.8e-07 58.5 45 62.2
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.9e-07 58.2 68 50.0
ClCG05G024840 Citrullus lanatus HOM05D031204 ORTHO05D004401 4.9e-07 58.2 115 42.6
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 6.4e-07 57.8 35 74.3
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 8.4e-07 57.4 103 37.9
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 8.4e-07 57.4 99 41.4
MELO3C012043.2 Cucumis melo HOM05D031204 ORTHO05D004401 1.1e-06 57.0 116 39.7
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 1.4e-06 56.6 32 78.1
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 1.4e-06 56.6 37 67.6
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.9e-06 56.2 93 41.9
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.9e-06 56.2 37 70.3
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 2.4e-06 55.8 45 55.6
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 3.2e-06 55.5 63 49.2
CsaV3_5G032070 Cucumis sativus L. HOM05D031204 ORTHO05D004401 3.2e-06 55.5 115 39.1
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 3.2e-06 55.5 103 37.9
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 4.2e-06 55.1 103 37.9
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 5.5e-06 54.7 109 37.6
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 5.5e-06 54.7 91 37.4
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 5.5e-06 54.7 37 64.9
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 7.1e-06 54.3 34 70.6
PSO591G0153 Papaver somniferum HOM05D044922 ORTHO05D050178 7.1e-06 54.3 110 37.3
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 9.3e-06 53.9 102 36.3
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 9.3e-06 53.9 113 38.1


User provided reference genes

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