Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 5.9e-157 557.8 341 100.0
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 1.5e-139 500.0 344 84.6
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 2.2e-135 486.1 344 82.8
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 1.1e-91 340.9 340 66.8
FAN17G1051 Fragaria x ananassa HOM05D007857 ORTHO05D009355 3.3e-67 259.6 217 76.5
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 1.1e-46 191.4 346 40.5
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 6.1e-45 185.7 332 38.3
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 3.8e-39 166.4 235 43.4
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 8.6e-39 165.2 317 36.9
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 8.0e-37 158.7 216 43.1
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 4.6e-32 142.9 173 48.6
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 7.8e-32 142.1 172 45.9
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 1.0e-31 141.7 176 46.0
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 1.3e-31 141.4 160 45.6
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 3.9e-31 139.8 162 45.7
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 1.5e-30 137.9 176 44.9
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 9.5e-30 135.2 167 43.7
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 1.0e-28 131.7 168 42.3
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 1.0e-28 131.7 156 40.4
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 1.4e-28 131.3 310 34.2
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 1.8e-28 131.0 172 43.6
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 1.8e-28 131.0 172 43.6
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 3.1e-28 130.2 178 39.9
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 4.0e-28 129.8 157 46.5
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 1.2e-27 128.3 321 33.3
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 1.5e-27 127.9 209 36.8
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 5.8e-27 125.9 169 38.5
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 2.2e-26 124.0 334 36.2
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 2.9e-26 123.6 155 42.6
TPR.G17074 Trifolium pratense HOM05D007857 ORTHO05D009355 6.4e-26 122.5 156 44.2
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 8.3e-26 122.1 209 34.9
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 8.3e-26 122.1 195 37.4
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 1.1e-25 121.7 333 30.6
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 1.4e-25 121.3 156 43.6
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 3.2e-25 120.2 156 44.2
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 5.4e-25 119.4 159 42.8
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 5.4e-25 119.4 158 42.4
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 1.6e-24 117.9 314 29.6
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 2.0e-24 117.5 215 33.5
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 2.7e-24 117.1 155 43.2
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 7.8e-24 115.5 160 41.9
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 2.3e-23 114.0 174 39.7
Medtr8g080270 Medicago truncatula HOM05D007857 ORTHO05D009355 2.3e-23 114.0 175 37.7
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 3.9e-23 113.2 160 38.8
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 3.9e-23 113.2 180 41.7
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 5.0e-23 112.8 137 43.8
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 3.3e-22 110.2 323 30.7
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 4.3e-22 109.8 158 38.6
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 4.3e-22 109.8 158 38.6
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 5.6e-22 109.4 306 29.4
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 5.6e-22 109.4 158 38.6
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 6.2e-21 105.9 133 43.6
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 1.1e-20 105.1 233 30.9
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 2.3e-20 104.0 209 34.4
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 5.2e-20 102.8 307 30.0
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 8.9e-20 102.1 193 34.2
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.2e-19 101.7 182 34.1
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 2.0e-19 100.9 178 38.8
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 4.4e-19 99.8 176 35.2
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 7.5e-19 99.0 153 38.6
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 2.2e-18 97.4 176 35.2
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 2.2e-18 97.4 176 35.2
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 2.2e-18 97.4 149 41.6
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 2.9e-18 97.1 171 33.3
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 4.9e-18 96.3 208 33.2
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 1.1e-17 95.1 107 48.6
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 2.4e-17 94.0 212 32.1
MBI11_g31349_MAGBIO Magnolia biondii HOM05D007857 ORTHO05D009355 7.8e-16 89.0 169 33.7
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 1.7e-15 87.8 163 36.8
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 2.5e-14 84.0 226 32.3
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 4.3e-14 83.2 216 31.0
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 1.2e-13 81.6 202 30.7
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 1.6e-13 81.3 231 31.2
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 1.6e-13 81.3 166 33.1
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 1.6e-13 81.3 166 33.1
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 1.6e-13 81.3 120 41.7
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 2.1e-13 80.9 84 46.4
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 3.6e-13 80.1 162 32.7
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 4.7e-13 79.7 162 32.7
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 8.1e-13 79.0 158 34.2
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.8e-12 77.8 135 34.8
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 3.1e-12 77.0 162 31.5
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 1.2e-11 75.1 153 33.3
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 7.6e-11 72.4 173 33.5
C02p23110 Brassica napus HOM05D010720 ORTHO05D009355 1.3e-10 71.6 220 29.1
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 1.7e-10 71.2 336 27.1
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 1.7e-10 71.2 114 36.0
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 2.9e-10 70.5 213 28.6
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 2.9e-10 70.5 220 29.1
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 8.4e-10 68.9 228 26.8
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 1.4e-09 68.2 110 36.4
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 1.9e-09 67.8 119 37.0
BcaB05g24293 Brassica carinata HOM05D010720 ORTHO05D009355 3.2e-09 67.0 215 28.4
Nitab4.5_0000146g0080 Nicotiana tabacum HOM05D007857 ORTHO05D009355 5.4e-09 66.2 69 49.3
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 1.6e-08 64.7 210 29.0
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 1.6e-08 64.7 210 29.0
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 1.0e-07 62.0 162 32.7
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 3.9e-07 60.1 183 30.1
ATR0686G174 Amborella trichopoda HOM05D007857 ORTHO05D009355 1.1e-06 58.5 77 39.0


User provided reference genes

Program Settings