Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.8e-240 835.5 420 100.0
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 1.4e-229 799.3 420 96.0
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 6.7e-227 790.4 420 95.7
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 8.8e-211 736.9 420 90.2
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.6e-210 735.3 420 90.2
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 6.7e-203 710.7 420 84.8
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 4.2e-189 664.8 420 78.6
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 4.4e-186 654.8 420 78.1
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 1.1e-184 650.2 417 76.7
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 4.1e-184 648.3 420 76.2
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 9.2e-184 647.1 364 88.5
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 9.2e-184 647.1 412 76.7
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 2.0e-183 646.0 422 76.8
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 3.5e-183 645.2 420 76.2
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 3.5e-183 645.2 414 75.8
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.5e-183 644.8 417 76.5
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 1.7e-182 642.9 500 66.8
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 2.9e-182 642.1 424 75.5
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.9e-182 642.1 414 76.6
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 3.8e-182 641.7 412 76.0
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 3.8e-182 641.7 420 75.7
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 8.6e-182 640.6 411 76.9
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 1.5e-181 639.8 414 75.8
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 1.5e-181 639.8 414 76.8
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 9.5e-181 637.1 425 75.5
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 1.6e-180 636.3 412 76.5
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 3.6e-180 635.2 420 75.7
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 1.0e-179 633.6 420 73.8
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 2.3e-179 632.5 419 74.9
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 2.0e-178 629.4 414 75.1
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 4.4e-178 628.2 432 73.4
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 1.3e-177 626.7 411 74.0
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.7e-177 626.3 416 75.2
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 3.2e-176 622.1 414 74.4
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 5.4e-176 621.3 419 72.8
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 9.2e-176 620.5 408 74.0
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.2e-175 620.2 419 72.3
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 2.7e-175 619.0 409 75.3
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 3.9e-174 615.1 441 71.0
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 1.9e-173 612.8 414 72.7
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 1.9e-173 612.8 445 70.3
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 3.3e-173 612.1 414 72.9
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 3.6e-172 608.6 420 71.7
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 8.0e-172 607.4 415 73.7
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 3.1e-171 605.5 422 71.1
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 5.2e-171 604.7 422 72.3
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 4.4e-170 601.7 466 67.6
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 1.7e-169 599.7 410 71.7
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 2.9e-169 599.0 411 70.8
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 1.4e-168 596.7 415 70.6
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 4.1e-168 595.1 411 72.7
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 3.0e-166 589.0 487 63.0
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 4.3e-165 585.1 414 69.8
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 7.3e-165 584.3 381 76.6
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 4.7e-164 581.6 410 71.0
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.3e-163 579.3 438 66.9
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.2e-163 578.2 416 68.8
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 7.5e-162 574.3 362 76.8
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 2.9e-161 572.4 409 68.0
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 4.9e-161 571.6 413 69.0
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.4e-160 569.3 414 69.3
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 2.3e-158 562.8 432 65.5
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 7.3e-157 557.8 421 68.6
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.4e-152 543.5 398 68.6
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 2.1e-151 539.7 412 67.2
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 3.5e-151 538.9 412 67.5
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 1.8e-147 526.6 328 79.3
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.0e-147 525.4 332 77.7
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 4.0e-147 525.4 440 62.5
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 5.2e-147 525.0 354 72.9
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 9.9e-146 520.8 335 77.0
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 2.2e-145 519.6 352 72.2
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 5.6e-141 505.0 438 60.3
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 9.9e-138 494.2 460 59.8
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.0e-123 445.7 279 78.1
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 4.2e-120 435.6 411 54.5
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 2.1e-119 433.3 399 56.9
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.0e-119 431.8 300 71.0
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.4e-115 420.6 271 76.4
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 5.9e-114 415.2 277 73.3
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 3.2e-112 409.5 425 49.6
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.3e-110 404.1 405 51.1
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 3.0e-110 402.9 276 72.1
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 2.1e-103 380.2 415 48.0
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.3e-101 372.9 398 49.2
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.3e-97 360.9 276 63.4
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.2e-95 354.4 190 94.7
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 6.1e-95 352.1 415 45.5
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.0e-94 351.3 315 57.8
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 2.2e-89 333.6 272 64.0
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 9.4e-88 328.2 535 38.3
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 2.1e-87 327.0 427 41.5
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 5.7e-85 318.9 220 72.7
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 7.5e-85 318.5 412 42.2
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 7.0e-83 312.0 245 62.4
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 4.5e-82 309.3 446 40.6
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 7.7e-82 308.5 399 43.6
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.2e-81 307.0 427 39.8
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.9e-81 306.6 418 39.0
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 8.5e-81 305.1 415 40.7
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 8.8e-78 295.0 187 77.5
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.5e-74 283.1 411 40.4
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.6e-63 246.5 416 36.1
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 2.7e-58 230.3 201 60.7
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 6.0e-58 229.2 365 38.6
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.3e-57 228.0 340 38.8
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 8.0e-55 218.8 167 69.5
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 1.5e-53 214.5 143 72.7
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.5e-53 214.5 405 34.8
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.1e-50 204.1 112 94.6
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 7.8e-50 202.2 396 34.3
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 2.3e-49 200.7 256 46.1
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 3.3e-48 196.8 104 94.2
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.7e-44 184.5 403 31.8
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 4.9e-44 183.0 263 42.2
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.4e-43 181.4 322 34.8
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.0e-42 176.0 328 35.4
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 7.3e-40 169.1 207 50.7
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.8e-38 164.5 116 65.5
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 8.4e-36 155.6 85 91.8
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 6.0e-34 149.4 112 67.9
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.3e-33 148.3 123 65.0
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.6e-33 146.0 182 44.0
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-31 141.7 245 35.5
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.1e-31 139.0 133 51.9
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.6e-29 134.0 206 38.3
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.6e-29 132.5 125 52.8
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-26 125.2 185 41.1
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.3e-25 121.7 117 53.0
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 6.2e-23 112.8 76 72.4
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.1e-22 110.5 257 30.4
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 3.8e-20 103.6 55 81.8
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.7e-15 87.0 77 50.6
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 4.8e-15 86.7 80 50.0
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.4e-14 84.3 104 36.5
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 3.1e-14 84.0 179 36.9
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 1.8e-09 68.2 261 24.9
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 6.7e-09 66.2 53 60.4
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 9.6e-08 62.4 44 61.4
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 2.1e-07 61.2 73 47.9


User provided reference genes

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