Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.7e-174 614.8 312 100.0
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.0e-155 552.0 312 92.0
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.1e-153 545.8 315 91.4
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.1e-153 545.8 315 91.4
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.1e-153 543.9 315 91.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.0e-144 515.0 300 90.7
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 5.8e-143 511.1 316 86.7
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 5.9e-127 458.0 321 77.6
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 6.5e-126 454.5 313 77.6
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.7e-122 441.4 313 76.4
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.0e-115 420.6 326 69.6
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 5.1e-115 418.3 338 68.6
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 8.8e-115 417.5 315 71.1
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 2.6e-114 416.0 324 69.1
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.6e-114 416.0 319 70.5
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.2e-113 412.9 316 69.6
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.8e-112 409.8 309 70.9
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.8e-112 409.8 311 70.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.8e-112 409.8 311 70.4
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.8e-112 409.8 317 69.7
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 6.9e-112 407.9 317 70.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 9.1e-112 407.5 317 69.7
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 2.6e-111 406.0 315 70.2
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 5.9e-111 404.8 316 67.1
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.9e-111 404.8 298 71.5
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 3.8e-110 402.1 306 70.6
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.0e-110 401.7 311 69.1
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 3.2e-109 399.1 315 69.2
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 4.2e-109 398.7 316 66.5
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 7.2e-109 397.9 318 66.4
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 9.4e-109 397.5 314 68.5
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.2e-108 397.1 316 66.5
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.2e-108 397.1 317 67.5
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 2.1e-108 396.4 319 67.4
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 4.7e-108 395.2 311 67.2
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 6.1e-108 394.8 314 65.3
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.0e-107 394.0 307 67.8
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.4e-107 393.7 322 67.4
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 1.8e-107 393.3 323 65.0
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 3.0e-107 392.5 316 65.2
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 8.8e-107 391.0 315 66.7
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.1e-106 390.6 316 64.9
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.5e-106 390.2 322 66.1
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 5.7e-106 388.3 316 64.2
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 9.7e-106 387.5 303 67.3
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.3e-105 387.1 316 64.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.7e-105 386.7 307 68.1
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 2.8e-105 386.0 322 64.9
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 6.3e-105 384.8 322 64.6
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 6.3e-105 384.8 322 64.9
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 8.2e-105 384.4 309 68.3
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.1e-104 384.0 323 64.1
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 2.4e-104 382.9 294 69.7
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 3.1e-104 382.5 317 63.1
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 5.3e-104 381.7 296 68.2
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 7.0e-104 381.3 320 63.1
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 9.1e-104 380.9 322 64.6
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.2e-103 380.6 322 64.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.2e-103 380.6 322 64.0
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 2.0e-103 379.8 322 63.7
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 2.0e-103 379.8 322 63.7
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 2.6e-103 379.4 345 61.4
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 3.5e-103 379.0 283 70.3
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.5e-103 378.6 278 70.9
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 5.9e-103 378.3 321 62.6
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.9e-103 378.3 327 63.3
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 7.7e-103 377.9 311 64.3
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.0e-102 377.5 276 71.7
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.0e-102 377.5 276 71.7
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.7e-102 376.7 321 62.6
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 2.2e-102 376.3 271 72.7
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 6.5e-102 374.8 308 67.2
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 3.2e-101 372.5 262 74.4
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.2e-100 370.5 298 64.4
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.2e-100 370.5 298 64.4
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.2e-100 370.5 312 65.4
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.6e-100 370.2 277 69.3
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 2.1e-100 369.8 318 63.5
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.7e-100 369.4 299 66.6
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 6.1e-100 368.2 299 66.2
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 6.1e-100 368.2 292 66.8
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 4.0e-99 365.5 327 60.6
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 4.0e-99 365.5 320 63.8
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 6.7e-99 364.8 291 65.3
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.8e-99 364.4 294 65.3
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 2.0e-98 363.2 279 65.6
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 9.7e-98 360.9 295 65.8
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.3e-97 360.5 295 65.8
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.7e-97 360.1 291 66.3
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.8e-97 358.6 281 66.5
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 1.8e-96 356.7 292 62.0
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.8e-96 356.7 319 63.6
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 9.1e-96 354.4 306 64.1
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 9.1e-96 354.4 292 61.6
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 9.1e-96 354.4 323 61.3
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.2e-95 354.0 296 65.5
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-95 353.6 278 65.1
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 3.5e-95 352.4 253 73.5
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 7.7e-95 351.3 270 65.9
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 7.7e-95 351.3 307 62.5
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.3e-94 350.5 257 67.7
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 8.5e-94 347.8 302 62.9
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 7.2e-93 344.7 298 63.4
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 3.6e-92 342.4 313 61.3
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.6e-92 342.4 235 71.1
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.6e-92 342.4 329 60.5
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.3e-91 339.7 312 59.3
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 2.0e-90 336.7 316 58.2
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 8.3e-89 331.3 278 63.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.4e-88 330.5 290 61.4
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.6e-87 327.0 285 61.4
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 6.5e-86 321.6 321 57.3
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.2e-85 318.9 310 59.7
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.1e-84 315.1 250 66.8
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 6.8e-83 311.6 275 57.8
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 6.3e-81 305.1 273 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.4e-80 303.9 282 58.2
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.5e-77 293.1 237 62.0
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 4.3e-77 292.4 316 53.2
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 2.3e-75 286.6 209 73.7
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.2e-73 280.0 286 51.4
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 3.2e-72 276.2 261 54.0
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 3.5e-71 272.7 279 53.8
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 3.0e-70 269.6 179 76.5
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.9e-70 269.2 314 48.1
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.1e-68 263.5 312 49.7
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.9e-64 250.4 189 68.3
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.1e-59 233.0 303 45.9
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 4.9e-57 225.7 237 53.6
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 2.7e-55 219.9 164 68.9
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.0e-54 216.5 164 68.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.9e-54 216.1 236 49.6
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.1e-53 214.5 164 65.9
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.4e-48 196.8 181 58.6
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-45 186.8 299 40.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.8e-43 180.6 129 69.0
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.4e-43 180.3 136 69.1
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 5.2e-43 179.1 156 62.2
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.7e-41 174.1 149 60.4
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.5e-39 166.4 207 46.9
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.5e-39 166.4 262 41.2
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 6.2e-36 155.6 259 38.6
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 6.9e-35 152.1 209 43.5
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.3e-30 137.9 82 84.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 5.6e-29 132.5 88 77.3
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.2e-26 124.8 129 55.0
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 2.0e-26 124.0 156 49.4
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 8.4e-25 118.6 106 58.5
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 6.7e-22 109.0 62 88.7
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.0e-19 98.6 60 71.7
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 9.0e-19 98.6 72 70.8
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 3.4e-18 96.7 133 45.9
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 3.8e-17 93.2 228 31.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 4.9e-17 92.8 194 37.6
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 2.7e-15 87.0 50 82.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 1.5e-13 81.3 134 35.1
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 6.3e-12 75.9 268 26.5
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 2.4e-11 73.9 109 36.7
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 3.8e-09 66.6 154 37.0
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 1.4e-08 64.7 152 25.7
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 1.0e-06 58.5 106 33.0
RcHm_v2.0_Chr7g0204021 Rosa chinensis HOM05D004215 ORTHO05D005293 1.3e-06 58.2 34 82.4
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 2.3e-06 57.4 156 28.8
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 3.9e-06 56.6 154 29.2
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 3.9e-06 56.6 154 29.9
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 5.1e-06 56.2 154 27.3
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 6.7e-06 55.8 54 61.1
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 6.7e-06 55.8 54 61.1
COL.COLO4_26135 Corchorus olitorius HOM05D000565 ORTHO05D004389 6.7e-06 55.8 154 27.9
Gohir.A05G186100 Gossypium hirsutum HOM05D000565 ORTHO05D004389 8.7e-06 55.5 154 27.9
Gohir.D05G189000 Gossypium hirsutum HOM05D000565 ORTHO05D004389 8.7e-06 55.5 154 27.9
Gorai.009G194200 Gossypium raimondii HOM05D000565 ORTHO05D004389 8.7e-06 55.5 154 27.9


User provided reference genes

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