Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.8e-166 588.6 299 100.0
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.0e-164 582.4 299 99.0
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 3.5e-153 545.0 299 94.0
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.7e-152 542.7 299 93.6
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 2.3e-149 532.3 300 91.3
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 6.6e-128 461.1 301 81.7
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 4.5e-116 421.8 269 82.9
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 7.4e-111 404.4 298 73.8
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 2.8e-110 402.5 293 75.1
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 2.8e-110 402.5 303 71.6
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 1.3e-107 393.7 298 72.5
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 3.8e-107 392.1 299 70.6
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 2.4e-106 389.4 294 70.7
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 7.1e-106 387.9 268 75.4
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 1.6e-105 386.7 288 71.9
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 2.7e-105 386.0 293 71.3
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 3.0e-104 382.5 288 71.9
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 3.0e-104 382.5 287 71.8
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 5.1e-104 381.7 294 70.1
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 5.1e-104 381.7 289 70.9
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 8.7e-104 380.9 296 70.9
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 8.7e-104 380.9 305 67.5
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 8.7e-104 380.9 287 70.7
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 1.1e-103 380.6 293 70.3
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 1.5e-103 380.2 266 72.2
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 4.3e-103 378.6 296 69.9
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 7.4e-103 377.9 293 68.9
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 7.4e-103 377.9 245 78.0
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 1.6e-102 376.7 296 68.6
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 2.1e-102 376.3 295 67.5
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 4.8e-102 375.2 290 66.9
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 6.2e-102 374.8 290 66.9
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 6.2e-102 374.8 298 67.1
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 8.2e-102 374.4 296 67.6
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 1.4e-101 373.6 291 67.4
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 1.8e-101 373.2 249 75.5
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 4.0e-101 372.1 290 66.6
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 5.3e-101 371.7 292 67.5
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 1.2e-100 370.5 307 65.8
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 2.0e-100 369.8 305 65.6
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 2.0e-100 369.8 294 67.3
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 4.5e-100 368.6 286 67.5
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 1.0e-99 367.5 305 64.9
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.3e-99 367.1 274 69.7
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 1.7e-99 366.7 271 72.0
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 2.2e-99 366.3 258 72.5
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 2.9e-99 365.9 276 69.9
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 4.9e-99 365.2 296 66.2
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 8.4e-99 364.4 315 65.4
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 8.4e-99 364.4 295 68.8
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 1.1e-98 364.0 296 67.2
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 1.4e-98 363.6 249 73.5
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.4e-98 363.6 292 65.8
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 1.4e-98 363.6 292 65.8
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 1.9e-98 363.2 254 73.2
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 2.5e-98 362.8 254 71.3
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 2.5e-98 362.8 293 66.2
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 2.5e-98 362.8 276 69.2
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 5.5e-98 361.7 285 66.0
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 7.1e-98 361.3 277 69.0
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 1.2e-97 360.5 292 65.4
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 1.6e-97 360.1 271 68.3
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 1.0e-96 357.5 301 63.5
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 1.3e-96 357.1 299 64.9
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 5.1e-96 355.1 297 64.6
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 8.7e-96 354.4 294 65.3
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 1.1e-95 354.0 256 71.1
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 1.5e-95 353.6 312 61.2
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 5.7e-95 351.7 284 64.4
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 7.4e-95 351.3 310 62.3
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 7.4e-95 351.3 285 66.3
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 3.1e-93 345.9 294 66.0
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 5.3e-93 345.1 279 65.6
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 1.5e-92 343.6 262 69.5
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 2.0e-92 343.2 275 68.0
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 3.8e-91 339.0 275 63.6
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.1e-90 337.4 288 66.3
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 5.5e-90 335.1 286 63.6
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 5.5e-90 335.1 257 66.9
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 4.6e-89 332.0 237 70.0
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 7.9e-89 331.3 255 67.5
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 1.9e-87 326.6 255 66.3
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 3.3e-87 325.9 274 67.2
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 1.7e-86 323.6 257 66.9
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 8.2e-86 321.2 239 66.1
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 1.0e-83 314.3 252 65.1
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 1.4e-82 310.5 259 65.3
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 5.5e-82 308.5 230 67.0
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 1.4e-80 303.9 243 67.1
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 1.1e-79 300.8 195 77.4
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 8.2e-78 294.7 203 73.9
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 1.4e-77 293.9 263 61.6
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 3.1e-77 292.7 247 64.8
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 5.0e-75 285.4 252 62.7
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 1.9e-74 283.5 225 62.2
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 3.9e-72 275.8 185 73.5
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 1.4e-64 250.8 262 54.2
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 2.8e-62 243.0 231 54.5
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 2.0e-60 236.9 226 54.4
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 5.4e-53 212.2 227 47.1
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 6.8e-48 195.3 137 72.3
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 3.3e-42 176.4 248 46.4
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 6.1e-41 172.2 231 40.3
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 5.2e-40 169.1 239 39.7
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.6e-36 157.5 243 38.3
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 9.8e-31 138.3 89 71.9
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 4.3e-26 122.9 135 50.4
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 7.8e-20 102.1 84 59.5
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 5.1e-19 99.4 100 51.0
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 2.6e-15 87.0 54 79.6
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 5.4e-13 79.3 56 67.9
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 7.8e-12 75.5 59 64.4
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 3.9e-11 73.2 103 47.6
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 2.1e-09 67.4 75 50.7
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 2.1e-09 67.4 75 50.7
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 6.2e-09 65.9 75 49.3
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 7.6e-07 58.9 53 47.2


User provided reference genes

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