Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0558 Fragaria x ananassa HOM05D000222 ORTHO05D004962 2.5e-184 648.7 335 100.0
FAN12G2155 Fragaria x ananassa HOM05D000222 ORTHO05D004962 5.3e-166 587.8 308 98.7
FAN22G0304 Fragaria x ananassa HOM05D000222 ORTHO05D004962 5.3e-166 587.8 308 98.7
FAN17G0744 Fragaria x ananassa HOM05D000222 ORTHO05D004962 3.8e-164 581.6 308 98.1
FvH4_4g33110 Fragaria vesca HOM05D000222 ORTHO05D004962 7.9e-162 573.9 310 97.1
RcHm_v2.0_Chr4g0442161 Rosa chinensis HOM05D000222 ORTHO05D004962 1.3e-137 493.4 329 84.5
Prupe.1G336600 Prunus persica HOM05D000222 ORTHO05D004962 3.1e-110 402.5 343 70.6
MD13G1016800 Malus domestica HOM05D000222 ORTHO05D004962 2.8e-98 362.8 340 68.8
MD16G1014700 Malus domestica HOM05D000222 ORTHO05D004962 7.5e-88 328.2 299 69.2
Dinv14377 Davidia involucrata HOM05D000222 ORTHO05D004962 6.4e-87 325.1 348 58.6
Haze_10830 Corylus avellana HOM05D000222 ORTHO05D004962 7.0e-86 321.6 348 60.1
Cfa015061 Carpinus fangiana HOM05D000222 ORTHO05D004962 1.0e-84 317.8 348 59.2
Rhsim09G0086600 Rhododendron simsii HOM05D000222 ORTHO05D004962 3.9e-84 315.8 353 56.4
CSS0002438 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D004962 2.3e-81 306.6 350 57.1
Thecc.02G305400 Theobroma cacao HOM05D000222 ORTHO05D004962 6.8e-81 305.1 352 57.7
Gorai.013G031700 Gossypium raimondii HOM05D000222 ORTHO05D004962 9.8e-80 301.2 343 58.3
Lj6A732T72 Lonicera japonica HOM05D000222 ORTHO05D004962 1.3e-79 300.8 347 54.8
Duzib251G0369 Durio zibethinus HOM05D000222 ORTHO05D004962 2.2e-79 300.1 350 56.9
Cpa.g.sc2.140 Carica papaya HOM05D000222 ORTHO05D004962 2.9e-79 299.7 339 56.6
CiPaw.05G188400 Carya illinoinensis HOM05D000222 ORTHO05D004962 8.3e-79 298.1 344 54.9
Glyma.05G138900 Glycine max HOM05D000222 ORTHO05D004962 8.3e-79 298.1 352 56.2
Duzib248G1586 Durio zibethinus HOM05D000222 ORTHO05D004962 1.4e-78 297.4 353 58.1
COL.COLO4_27597 Corchorus olitorius HOM05D000222 ORTHO05D004962 4.1e-78 295.8 355 56.9
Hma1.2p1_1450F.1_g284240 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 4.1e-78 295.8 340 56.8
FAN07G1810 Fragaria x ananassa HOM05D000222 ORTHO05D004962 5.4e-78 295.4 150 98.0
Manes.15G137700 Manihot esculenta HOM05D000222 ORTHO05D004962 7.0e-78 295.0 334 56.3
Gohir.D13G027800 Gossypium hirsutum HOM05D000222 ORTHO05D004962 1.2e-77 294.3 345 57.7
Gohir.A13G029500 Gossypium hirsutum HOM05D000222 ORTHO05D004962 3.5e-77 292.7 345 57.4
Phvul.002G182200 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 7.8e-77 291.6 343 55.1
Hma1.2p1_0037F.1_g023820 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 2.3e-76 290.0 333 57.4
Manes.17G086800 Manihot esculenta HOM05D000222 ORTHO05D004962 5.0e-76 288.9 332 56.9
Ca_11582_v3 Cicer arietinum L. HOM05D000222 ORTHO05D004962 2.5e-75 286.6 342 56.4
TPR.G5124 Trifolium pratense HOM05D000222 ORTHO05D004962 2.5e-75 286.6 330 56.4
CiPaw.06G056800 Carya illinoinensis HOM05D000222 ORTHO05D004962 3.3e-75 286.2 302 61.3
VMungo0251G0007 Vigna mungo HOM05D000222 ORTHO05D004962 5.6e-75 285.4 270 63.3
MELO3C005247.2 Cucumis melo HOM05D000222 ORTHO05D004962 2.1e-74 283.5 330 54.8
Lj4g0012229 Lotus japonicus HOM05D000222 ORTHO05D004962 2.8e-74 283.1 334 55.4
Sed0022559 Sechium edule HOM05D000222 ORTHO05D004962 1.8e-73 280.4 271 62.0
DCAR_023547 Daucus carota HOM05D000222 ORTHO05D004962 2.3e-73 280.0 350 53.4
ClCG01G006740 Citrullus lanatus HOM05D000222 ORTHO05D004962 3.1e-73 279.6 330 55.8
Ciclev10014296m.g Citrus clementina HOM05D000222 ORTHO05D004962 5.2e-73 278.9 340 55.0
Lj2g0002621 Lotus japonicus HOM05D000222 ORTHO05D004962 5.2e-73 278.9 331 53.2
Actinidia20114 Actinidia chinensis HOM05D000222 ORTHO05D004962 8.9e-73 278.1 328 54.3
CsaV3_5G027810 Cucumis sativus L. HOM05D000222 ORTHO05D004962 3.4e-72 276.2 331 54.1
Actinidia12434 Actinidia chinensis HOM05D000222 ORTHO05D004962 1.7e-71 273.9 326 54.9
QL03p038766 Quercus lobata HOM05D000222 ORTHO05D004962 1.7e-71 273.9 347 53.0
TAR374G0583 Trochodendron aralioides HOM05D000222 ORTHO05D004962 5.4e-70 268.9 334 53.6
Atru.chr11.750 Acer truncatum HOM05D000222 ORTHO05D004962 1.2e-69 267.7 347 53.9
DCAR_030303 Daucus carota HOM05D000222 ORTHO05D004962 1.2e-69 267.7 337 52.8
Potri.010G102600 Populus trichocarpa HOM05D000222 ORTHO05D004962 1.2e-69 267.7 342 53.5
Lalb_Chr07g0187811 Lupinus albus HOM05D000222 ORTHO05D004962 2.7e-69 266.5 325 54.5
Glyma.08G094100 Glycine max HOM05D000222 ORTHO05D004962 3.5e-69 266.2 327 55.0
Sabra10G0075300 Salix brachista HOM05D000222 ORTHO05D004962 4.6e-69 265.8 340 53.8
Eucgr.B02662 Eucalyptus grandis HOM05D000222 ORTHO05D004962 6.0e-69 265.4 342 54.4
Oeu054230.1 Olea europaea HOM05D000222 ORTHO05D004962 3.9e-68 262.7 332 52.7
MSTRG.13646 Avicennia marina HOM05D000222 ORTHO05D004962 1.1e-67 261.2 318 55.0
Actinidia38426 Actinidia chinensis HOM05D000222 ORTHO05D004962 1.9e-67 260.4 348 52.0
Lj3A861T64 Lonicera japonica HOM05D000222 ORTHO05D004962 2.5e-67 260.0 345 51.9
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 1.2e-66 257.7 333 52.6
Sabra08G0105200 Salix brachista HOM05D000222 ORTHO05D004962 2.8e-66 256.5 274 56.9
Lalb_Chr13g0293651 Lupinus albus HOM05D000222 ORTHO05D004962 1.1e-65 254.6 336 51.8
MSTRG.2110 Avicennia marina HOM05D000222 ORTHO05D004962 1.8e-65 253.8 285 57.2
Cc11_g05940 Coffea canephora HOM05D000222 ORTHO05D004962 4.0e-65 252.7 279 57.3
PSO063G5028 Papaver somniferum HOM05D000222 ORTHO05D004962 8.9e-65 251.5 346 50.9
Sc14g0006780 Simmondsia chinensis HOM05D000222 ORTHO05D004962 5.8e-64 248.8 296 55.7
THA.LOC104805095 Tarenaya hassleriana HOM05D000222 ORTHO05D004962 5.8e-64 248.8 321 51.7
arahy.Tifrunner.gnm1.ann1.J9EPM7 Arachis hypogaea HOM05D000222 ORTHO05D004962 7.6e-64 248.4 351 50.7
Psat7g083280 Pisum sativum HOM05D000222 ORTHO05D004962 7.6e-64 248.4 237 65.4
arahy.Tifrunner.gnm1.ann1.EPT9JX Arachis hypogaea HOM05D000222 ORTHO05D004962 9.9e-64 248.1 351 50.1
PSO782G4980 Papaver somniferum HOM05D000222 ORTHO05D004962 9.9e-64 248.1 346 50.6
Nitab4.5_0003878g0010 Nicotiana tabacum HOM05D000222 ORTHO05D004962 6.4e-63 245.4 327 52.3
Nitab4.5_0013820g0010 Nicotiana tabacum HOM05D000222 ORTHO05D004962 1.9e-62 243.8 323 52.3
TWI74G1486 Tripterygium wilfordii HOM05D000222 ORTHO05D004962 1.9e-62 243.8 324 50.3
Sed0000815 Sechium edule HOM05D000222 ORTHO05D004962 1.7e-60 237.3 327 48.6
VMungo1215G2627 Vigna mungo HOM05D000222 ORTHO05D004962 3.0e-60 236.5 334 49.7
Potri.008G138100 Populus trichocarpa HOM05D000222 ORTHO05D004962 5.1e-60 235.7 345 50.4
Peaxi162Scf00937g00112 Petunia axillaris HOM05D000222 ORTHO05D004962 1.5e-59 234.2 277 56.3
Phvul.003G014700 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 1.9e-59 233.8 355 47.6
Glyma.07G174100 Glycine max HOM05D000222 ORTHO05D004962 4.3e-59 232.6 384 46.4
Sc14g0006790 Simmondsia chinensis HOM05D000222 ORTHO05D004962 7.3e-59 231.9 290 53.4
Glyma.20G012600 Glycine max HOM05D000222 ORTHO05D004962 1.1e-57 228.0 389 44.5
Lsat_1_v5_gn_2_36420 Lactuca sativa HOM05D000222 ORTHO05D004962 1.4e-57 227.6 325 48.6
Sp1g13180 Schrenkiella parvula HOM05D000222 ORTHO05D004962 2.9e-55 219.9 353 46.5
Thhalv10006891m.g Eutrema salsugineum HOM05D000222 ORTHO05D004962 6.4e-55 218.8 355 46.5
Lalb_Chr12g0209391 Lupinus albus HOM05D000222 ORTHO05D004962 6.4e-55 218.8 304 51.0
Nn4g24491 Nelumbo nucifera HOM05D000222 ORTHO05D004962 1.4e-54 217.6 345 47.2
SGA_v2.0_scaffold65G22111 Striga asiatica HOM05D000222 ORTHO05D004962 4.6e-53 212.6 311 51.8
Hund22722 Selenicereus undatus HOM05D000222 ORTHO05D004962 6.0e-53 212.2 279 54.1
CANSAT78G2041 Cannabis sativa HOM05D000222 ORTHO05D004962 1.9e-51 207.2 386 41.7
AT1G14740 Arabidopsis thaliana HOM05D000222 ORTHO05D004962 3.3e-51 206.5 356 46.3
AL1G26750 Arabidopsis lyrata HOM05D000222 ORTHO05D004962 7.3e-51 205.3 359 45.7
Aqoxy3G04105 Aquilegia oxysepala HOM05D000222 ORTHO05D004962 1.3e-50 204.5 343 45.8
Migut.E00527 Erythranthe guttata HOM05D000222 ORTHO05D004962 2.8e-50 203.4 311 48.2
BcaB02g06545 Brassica carinata HOM05D000222 ORTHO05D004962 3.1e-49 199.9 349 46.1
TAR622G0644 Trochodendron aralioides HOM05D000222 ORTHO05D004962 4.9e-47 192.6 246 52.4
MBI19_g10908_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D004962 6.4e-47 192.2 300 45.0
unitig_52.g17291 Utricularia gibba HOM05D000222 ORTHO05D004962 8.4e-47 191.8 318 47.2
AUR62011848 Chenopodium quinoa HOM05D000222 ORTHO05D004962 2.7e-45 186.8 232 53.9
Carub.0001s1452 Capsella rubella HOM05D000222 ORTHO05D004962 3.5e-45 186.4 360 44.2
ECA246G4790 Erigeron canadensis HOM05D000222 ORTHO05D004962 1.0e-44 184.9 305 45.2
Aa31LG1G350 Aethionema arabicum HOM05D000222 ORTHO05D004962 3.9e-44 183.0 313 45.7
Ah.08g214190 Amaranthus hybridus HOM05D000222 ORTHO05D004962 2.5e-43 180.3 279 48.7
BcaC07g38759 Brassica carinata HOM05D000222 ORTHO05D004962 2.8e-42 176.8 297 44.8
C08p16900 Brassica napus HOM05D000222 ORTHO05D004962 2.8e-42 176.8 297 44.8
BolC8t49317H Brassica oleracea HOM05D000222 ORTHO05D004962 2.8e-42 176.8 297 44.8
GSVIVG01011609001 Vitis vinifera HOM05D000222 ORTHO05D004962 2.6e-40 170.2 255 48.2
AUR62024692 Chenopodium quinoa HOM05D000222 ORTHO05D004962 5.8e-40 169.1 224 52.2
CAN.G647.5 Capsicum annuum HOM05D000222 ORTHO05D004962 1.3e-39 167.9 286 46.9
BcaB03g13083 Brassica carinata HOM05D000222 ORTHO05D004962 5.5e-38 162.5 299 45.5
ATR0598G336 Amborella trichopoda HOM05D000222 ORTHO05D004962 1.5e-35 154.5 351 37.3
HPP92_004255 Vanilla planifolia HOM05D000222 ORTHO05D004962 4.3e-35 152.9 281 42.0
EL10Ac6g14203 Beta vulgaris HOM05D000222 ORTHO05D004962 6.2e-34 149.1 335 40.0
AUR62024691 Chenopodium quinoa HOM05D000222 ORTHO05D004962 2.6e-32 143.7 221 47.5
CDE11G0845 Ceratophyllum demersum HOM05D000222 ORTHO05D004962 8.4e-31 138.7 270 41.1
PGSC0003DMG400027429 Solanum tuberosum HOM05D000222 ORTHO05D004962 2.1e-29 134.0 247 44.1
A06p10790 Brassica napus HOM05D000222 ORTHO05D004962 2.7e-29 133.7 352 37.2
BraA06t24257Z Brassica rapa HOM05D000222 ORTHO05D004962 4.6e-29 132.9 351 37.0
BcaC05g25393 Brassica carinata HOM05D000222 ORTHO05D004962 1.8e-28 131.0 354 37.3
C05p12690 Brassica napus HOM05D000222 ORTHO05D004962 1.8e-28 131.0 354 37.3
BolC5t30012H Brassica oleracea HOM05D000222 ORTHO05D004962 1.8e-28 131.0 354 37.3
Sopen05g015580 Solanum pennellii HOM05D000222 ORTHO05D004962 3.3e-27 126.7 234 46.2
Solyc05g018500.3 Solanum lycopersicum HOM05D000222 ORTHO05D004962 2.8e-26 123.6 234 44.9
Nn4g25892 Nelumbo nucifera HOM05D000222 ORTHO05D004962 6.9e-25 119.0 275 37.5
SHI04273 Sapria himalayana HOM05D000222 ORTHO05D004962 5.0e-23 112.8 250 37.2
CDE05G0510 Ceratophyllum demersum HOM05D000222 ORTHO05D004962 2.5e-22 110.5 199 45.7
ECA234G2546 Erigeron canadensis HOM05D000222 ORTHO05D004962 7.9e-21 105.5 225 36.4
TAR226G0003 Trochodendron aralioides HOM05D000222 ORTHO05D007489 2.9e-15 87.0 170 35.3
Sed0023833 Sechium edule HOM05D000222 ORTHO05D372944 2.6e-11 73.9 126 39.7
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 3.3e-11 73.6 76 52.6
MBI02_g23146_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D007489 7.4e-11 72.4 176 33.5
TAR369G0280 Trochodendron aralioides HOM05D000222 ORTHO05D007489 9.7e-11 72.0 186 33.3
C09p59150 Brassica napus HOM05D000222 ORTHO05D042652 4.8e-10 69.7 142 37.3
BolC9t58758H Brassica oleracea HOM05D000222 ORTHO05D042652 4.8e-10 69.7 142 37.3
TAR623G1053 Trochodendron aralioides HOM05D000222 ORTHO05D007489 8.2e-10 68.9 191 32.5
Zm00001eb010160 Zea mays HOM05D000222 ORTHO05D004962 3.1e-09 67.0 282 31.6
Dinv05676 Davidia involucrata HOM05D000222 ORTHO05D004962 1.2e-08 65.1 54 66.7
PGSC0003DMG400022774 Solanum tuberosum HOM05D000222 ORTHO05D004962 1.2e-08 65.1 88 51.1
Zm00001eb399110 Zea mays HOM05D000222 ORTHO05D004962 1.2e-08 65.1 285 30.5
Os03g0239200 Oryza sativa ssp. japonica HOM05D000222 ORTHO05D004962 1.5e-08 64.7 264 31.1
Sed0023531 Sechium edule HOM05D000222 ORTHO05D007489 1.5e-08 64.7 90 43.3
GSVIVG01032137001 Vitis vinifera HOM05D000222 ORTHO05D007489 2.0e-08 64.3 178 33.7
Aqoxy2G00157 Aquilegia oxysepala HOM05D000222 ORTHO05D007489 1.0e-07 62.0 223 32.3
CSS0024701 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D007489 1.0e-07 62.0 195 31.3
ATR0332G117 Amborella trichopoda HOM05D000222 ORTHO05D007489 1.3e-07 61.6 353 27.8
Sopen01g001160 Solanum pennellii HOM05D000222 ORTHO05D004962 3.8e-07 60.1 88 47.7
Sopen04g003340 Solanum pennellii HOM05D000222 ORTHO05D004962 3.8e-07 60.1 137 40.1
Actinidia31071 Actinidia chinensis HOM05D000222 ORTHO05D007489 5.0e-07 59.7 134 37.3
PGSC0003DMG400022773 Solanum tuberosum HOM05D000222 ORTHO05D004962 6.5e-07 59.3 88 48.9
CiPaw.14G001500 Carya illinoinensis HOM05D000222 ORTHO05D007489 1.1e-06 58.5 163 30.1
Dinv43425 Davidia involucrata HOM05D000222 ORTHO05D007489 1.1e-06 58.5 220 31.8
TWI09G0834 Tripterygium wilfordii HOM05D000222 ORTHO05D007489 1.1e-06 58.5 108 38.0
TWI53G0693 Tripterygium wilfordii HOM05D000222 ORTHO05D007489 1.4e-06 58.2 251 26.3
Cpa.g.sc125.14 Carica papaya HOM05D000222 ORTHO05D007489 1.9e-06 57.8 160 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2398 Anthoceros agrestis HOM05D000222 ORTHO05D003997 2.5e-06 57.4 84 47.6
ClCG09G004010 Citrullus lanatus HOM05D000222 ORTHO05D007489 2.5e-06 57.4 231 27.7
PGSC0003DMG400029502 Solanum tuberosum HOM05D000222 ORTHO05D004962 3.2e-06 57.0 255 32.5
C03p64770 Brassica napus HOM05D020469 ORTHO05D022045 4.2e-06 56.6 89 41.6
BolC3t18740H Brassica oleracea HOM05D020469 ORTHO05D022045 4.2e-06 56.6 89 41.6
QL04p008560 Quercus lobata HOM05D000222 ORTHO05D007489 4.2e-06 56.6 159 30.8
MELO3C023565.2 Cucumis melo HOM05D000222 ORTHO05D007489 9.4e-06 55.5 231 27.7


User provided reference genes

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