Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.7e-71 271.9 142 100.0
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 6.7e-70 267.3 142 97.2
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.7e-70 267.3 142 97.2
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 4.3e-69 264.6 142 97.2
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.6e-69 264.2 142 97.9
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-68 262.7 142 95.1
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.9e-67 257.3 137 97.1
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.6e-66 255.4 141 95.7
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 3.7e-52 208.4 140 80.7
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.9e-49 198.7 141 76.6
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 3.8e-49 198.4 141 76.6
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.2e-47 193.4 143 76.2
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.2e-47 193.4 143 76.2
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 1.2e-47 193.4 143 79.7
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.6e-47 193.0 143 76.2
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.7e-47 192.2 143 74.8
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.9e-47 190.7 143 74.1
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-46 189.9 143 73.4
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 1.8e-38 162.9 142 68.3
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 1.7e-36 156.4 142 66.9
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.0e-25 118.2 145 51.0
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 9.4e-24 114.0 130 51.5
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.6e-23 113.2 146 49.3
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 8.8e-22 107.5 151 47.7
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 2.0e-21 106.3 142 50.7
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 3.4e-21 105.5 143 47.6
CANSAT01G2259 Cannabis sativa HOM05D004062 ORTHO05D004417 7.5e-21 104.4 134 45.5
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.8e-20 102.4 145 46.9
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 2.8e-20 102.4 136 44.1
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 8.3e-20 100.9 147 49.0
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 8.3e-20 100.9 145 48.3
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.1e-19 100.5 138 46.4
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 9.1e-19 97.4 142 48.6
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.2e-18 97.1 148 46.6
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.6e-18 96.7 147 44.9
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 2.0e-18 96.3 133 48.9
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.7e-18 95.9 143 45.5
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 7.7e-18 94.4 148 43.9
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 2.9e-17 92.4 149 42.3
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.8e-17 92.0 145 42.1
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 5.0e-17 91.7 147 43.5
Cfa015828 Carpinus fangiana HOM05D004062 ORTHO05D004417 6.5e-17 91.3 145 44.1
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 8.6e-17 90.9 146 40.4
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-16 90.5 142 43.7
Eucgr.G02232 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.5e-16 90.1 143 41.3
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.9e-16 89.7 148 41.9
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 7.2e-16 87.8 125 46.4
Cfa015829 Carpinus fangiana HOM05D004062 ORTHO05D004417 9.5e-16 87.4 95 52.6
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 1.2e-15 87.0 142 42.3
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 1.2e-15 87.0 145 42.1
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.6e-15 86.7 143 44.8
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 3.6e-15 85.5 143 40.6
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 3.6e-15 85.5 145 43.4
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.6e-15 85.5 143 43.4
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 4.7e-15 85.1 140 40.7
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.7e-15 85.1 146 41.1
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 6.1e-15 84.7 132 47.7
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.8e-14 83.2 145 42.8
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.3e-14 82.8 147 40.8
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.3e-14 82.8 134 42.5
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 2.3e-14 82.8 147 40.8
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.3e-14 82.8 144 42.4
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 3.0e-14 82.4 147 42.2
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 4.0e-14 82.0 145 40.7
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 4.0e-14 82.0 145 40.7
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 6.8e-14 81.3 143 42.0
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 8.9e-14 80.9 145 38.6
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.2e-13 80.5 133 37.6
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 4.4e-13 78.6 142 38.7
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.7e-13 78.2 144 41.0
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 5.7e-13 78.2 145 37.2
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 7.5e-13 77.8 122 42.6
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 9.8e-13 77.4 147 36.7
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 9.8e-13 77.4 140 42.1
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 1.7e-12 76.6 136 42.6
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.7e-12 76.6 138 42.0
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.8e-12 75.9 145 38.6
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 2.8e-12 75.9 145 40.0
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 3.7e-12 75.5 138 39.1
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.7e-12 75.5 152 35.5
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.3e-12 74.3 148 42.6
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.1e-11 73.9 135 39.3
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 1.1e-11 73.9 146 37.7
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.4e-11 73.6 143 37.8
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 1.8e-11 73.2 153 37.9
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 1.8e-11 73.2 153 37.9
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 2.4e-11 72.8 140 36.4
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 3.1e-11 72.4 143 37.1
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 3.1e-11 72.4 134 38.8
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 4.1e-11 72.0 134 38.1
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.4e-11 71.6 137 40.9
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 7.0e-11 71.2 141 37.6
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 7.0e-11 71.2 143 34.3
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 5.9e-10 68.2 149 36.9
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 5.9e-10 68.2 143 34.3
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 7.8e-10 67.8 139 34.5
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.0e-09 67.4 146 33.6
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.3e-09 66.2 144 31.9
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 2.9e-09 65.9 142 36.6
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.0e-09 65.1 137 36.5
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 5.0e-09 65.1 141 34.0
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 6.6e-09 64.7 137 33.6
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 1.5e-08 63.5 139 32.4
CsaV3_5G028760 Cucumis sativus L. HOM05D004062 ORTHO05D004417 1.5e-08 63.5 109 37.6
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.9e-08 63.2 133 39.1
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.5e-08 62.8 140 36.4
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 2.5e-08 62.8 139 35.3
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 4.3e-08 62.0 145 33.8
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 4.3e-08 62.0 145 33.8
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 5.6e-08 61.6 143 33.6
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 7.3e-08 61.2 127 33.1
DCAR_023626 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-07 60.5 143 34.3
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 1.2e-07 60.5 124 37.1
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 1.6e-07 60.1 125 37.6
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 2.1e-07 59.7 141 36.2
Oeu008332.1 Olea europaea HOM05D003529 ORTHO05D004106 2.1e-07 59.7 132 33.3
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 2.1e-07 59.7 137 32.8
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 2.1e-07 59.7 132 32.6
FAN07G1535 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.8e-07 59.3 30 96.7
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 3.6e-07 58.9 139 33.1
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 8.0e-07 57.8 150 32.0
FAN12G1400 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.0e-06 57.4 35 85.7
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.0e-06 57.4 147 32.7
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 1.4e-06 57.0 138 30.4
FAN17G0453 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-06 57.0 33 87.9
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.8e-06 56.6 133 33.1
HPP92_021069 Vanilla planifolia HOM05D034985 ORTHO05D004417 1.8e-06 56.6 139 33.1
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 3.0e-06 55.8 136 33.8
Sc17g0003040 Simmondsia chinensis HOM05D003529 ORTHO05D004106 3.0e-06 55.8 145 31.7
SGA_v2.0_scaffold376G50256 Striga asiatica HOM05D003529 ORTHO05D004106 3.0e-06 55.8 140 30.0
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 3.0e-06 55.8 144 31.2
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 4.0e-06 55.5 136 33.8
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 4.0e-06 55.5 136 35.3
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 4.0e-06 55.5 138 34.1
Manes.01G224100 Manihot esculenta HOM05D003529 ORTHO05D004106 5.2e-06 55.1 141 30.5
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 6.8e-06 54.7 138 29.7


User provided reference genes

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