Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 4.8e-117 424.5 208 100.0
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.5e-110 402.9 208 95.2
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.2e-98 362.5 215 86.0
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 6.7e-79 297.7 208 74.5
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 8.8e-79 297.4 208 74.5
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.5e-78 296.6 208 74.5
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 2.1e-72 276.2 208 71.2
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 3.3e-65 252.3 206 65.5
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 2.0e-62 243.0 207 64.3
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 1.7e-61 240.0 200 64.0
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 7.8e-59 231.1 204 58.3
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.0e-58 230.7 190 62.6
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 2.3e-58 229.6 186 63.4
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 5.0e-58 228.4 203 59.6
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 6.6e-58 228.0 198 60.1
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 8.6e-58 227.6 205 60.0
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.1e-57 227.3 182 63.2
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 1.9e-57 226.5 198 59.1
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 1.9e-57 226.5 186 62.4
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 2.5e-57 226.1 199 57.8
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.5e-57 226.1 190 59.5
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 4.3e-57 225.3 211 55.9
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 4.3e-57 225.3 206 56.8
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 5.6e-57 224.9 202 59.4
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 7.3e-57 224.6 193 58.5
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 7.3e-57 224.6 198 58.6
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.2e-56 223.8 188 59.0
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 1.2e-56 223.8 205 58.5
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 1.2e-56 223.8 199 57.3
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 1.2e-56 223.8 199 57.3
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 1.2e-56 223.8 199 57.3
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.6e-56 223.4 186 61.3
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 2.1e-56 223.0 201 59.2
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 2.1e-56 223.0 206 55.8
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 2.1e-56 223.0 182 61.5
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 2.1e-56 223.0 203 57.1
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 2.1e-56 223.0 204 55.9
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 2.1e-56 223.0 202 59.9
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 2.8e-56 222.6 198 59.1
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 2.8e-56 222.6 206 56.8
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 3.6e-56 222.2 200 56.5
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 4.7e-56 221.9 203 56.2
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 6.1e-56 221.5 181 61.3
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 6.1e-56 221.5 202 55.9
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 6.1e-56 221.5 182 59.9
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 8.0e-56 221.1 204 56.4
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 8.0e-56 221.1 182 59.9
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 1.0e-55 220.7 183 61.2
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 1.0e-55 220.7 202 57.4
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 1.0e-55 220.7 202 57.4
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 1.0e-55 220.7 197 55.8
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 1.0e-55 220.7 183 60.7
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 1.0e-55 220.7 182 61.5
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 1.4e-55 220.3 196 56.6
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.4e-55 220.3 194 57.2
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 1.4e-55 220.3 182 59.9
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 1.8e-55 219.9 206 56.8
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.8e-55 219.9 219 55.3
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 2.3e-55 219.5 186 59.7
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 3.1e-55 219.2 198 57.1
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 3.1e-55 219.2 206 55.3
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 3.1e-55 219.2 206 55.3
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 3.1e-55 219.2 206 55.3
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 3.1e-55 219.2 206 55.3
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 3.1e-55 219.2 197 56.9
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 5.2e-55 218.4 201 55.2
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 5.2e-55 218.4 206 55.3
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 5.2e-55 218.4 202 55.4
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 5.2e-55 218.4 202 55.4
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 5.2e-55 218.4 184 58.2
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 6.8e-55 218.0 200 55.5
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 8.9e-55 217.6 203 56.2
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 8.9e-55 217.6 197 56.3
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 1.2e-54 217.2 184 59.8
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 1.2e-54 217.2 182 60.4
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 1.5e-54 216.9 202 56.9
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 1.5e-54 216.9 205 56.6
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 2.0e-54 216.5 200 55.0
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 2.0e-54 216.5 191 58.1
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 2.6e-54 216.1 197 56.9
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 2.6e-54 216.1 201 54.2
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 2.6e-54 216.1 191 58.1
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 3.4e-54 215.7 197 56.9
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 4.4e-54 215.3 202 55.9
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 1.3e-53 213.8 201 54.2
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 1.7e-53 213.4 181 59.1
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.2e-53 213.0 182 57.7
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.2e-53 213.0 182 57.7
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.7e-53 212.2 196 56.1
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.7e-53 212.2 196 56.1
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 4.9e-53 211.8 182 58.2
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 6.4e-53 211.5 206 54.4
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 6.4e-53 211.5 202 55.0
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 8.3e-53 211.1 206 54.4
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 8.3e-53 211.1 206 54.4
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 8.3e-53 211.1 206 52.4
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 2.4e-52 209.5 184 57.1
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 3.2e-52 209.1 184 55.4
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 4.1e-52 208.8 184 55.4
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 5.4e-52 208.4 212 53.3
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 7.0e-52 208.0 184 56.5
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 2.7e-51 206.1 206 51.5
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 2.7e-51 206.1 200 53.0
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 3.5e-51 205.7 181 54.7
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 3.5e-51 205.7 184 59.2
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 1.3e-50 203.8 180 55.6
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 5.0e-50 201.8 201 51.7
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 1.5e-49 200.3 202 50.0
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 2.1e-48 196.4 198 51.0
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 4.4e-46 188.7 192 51.0
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 3.5e-43 179.1 168 55.4
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 7.8e-43 177.9 100 81.0
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 1.0e-42 177.6 97 83.5
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 3.9e-42 175.6 201 46.3
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.3e-37 160.6 203 47.3
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 1.3e-37 160.6 174 45.4
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 9.2e-36 154.5 201 38.3
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 1.2e-35 154.1 206 43.7
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 4.3e-33 145.6 83 78.3
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 4.0e-23 112.5 72 72.2
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-22 110.9 83 62.7
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 6.2e-16 88.6 86 53.5
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.5e-09 67.4 204 27.5
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 2.4e-07 60.1 51 56.9
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 4.0e-07 59.3 154 25.3


User provided reference genes

Program Settings