Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 3.2e-86 322.0 199 100.0
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 6.5e-55 218.0 198 73.7
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.1e-41 174.1 155 81.3
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 6.5e-39 164.9 157 74.5
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 8.5e-39 164.5 158 79.7
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 8.0e-37 157.9 152 74.3
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 1.8e-33 146.7 154 70.8
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 3.1e-33 146.0 154 59.7
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.5e-27 124.8 155 51.0
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 2.0e-19 100.1 157 43.9
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 2.6e-19 99.8 161 47.2
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 7.3e-14 81.6 52 73.1
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 7.3e-14 81.6 158 40.5
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 3.6e-13 79.3 51 64.7
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 6.2e-13 78.6 46 71.7
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 1.1e-12 77.8 157 36.9
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 1.4e-12 77.4 57 59.6
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 1.4e-12 77.4 49 69.4
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 1.8e-12 77.0 44 79.5
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 2.3e-12 76.6 48 66.7
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 2.3e-12 76.6 48 66.7
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 4.0e-12 75.9 48 66.7
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 4.0e-12 75.9 44 77.3
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 5.2e-12 75.5 46 67.4
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 5.2e-12 75.5 48 68.8
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 6.8e-12 75.1 45 71.1
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 6.8e-12 75.1 45 71.1
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 6.8e-12 75.1 45 71.1
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 8.9e-12 74.7 52 65.4
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 8.9e-12 74.7 53 67.9
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 8.9e-12 74.7 46 69.6
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 1.5e-11 73.9 45 68.9
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 2.6e-11 73.2 61 55.7
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 2.6e-11 73.2 45 71.1
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 2.6e-11 73.2 44 70.5
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 2.6e-11 73.2 56 62.5
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 3.4e-11 72.8 61 57.4
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 4.4e-11 72.4 46 67.4
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 4.4e-11 72.4 142 35.2
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 5.8e-11 72.0 53 64.2
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 7.5e-11 71.6 42 71.4
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 7.5e-11 71.6 42 73.8
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 9.8e-11 71.2 51 60.8
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 1.3e-10 70.9 46 63.0
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 1.3e-10 70.9 48 68.8
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 1.3e-10 70.9 46 67.4
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 1.3e-10 70.9 161 35.4
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 1.7e-10 70.5 58 62.1
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 2.2e-10 70.1 36 83.3
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 2.2e-10 70.1 36 83.3
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.9e-10 69.7 42 66.7
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 2.9e-10 69.7 44 68.2
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 2.9e-10 69.7 44 68.2
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 2.9e-10 69.7 44 70.5
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 4.9e-10 68.9 42 73.8
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 4.9e-10 68.9 41 73.2
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 4.9e-10 68.9 41 73.2
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 6.4e-10 68.6 40 77.5
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 6.4e-10 68.6 40 77.5
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 6.4e-10 68.6 54 57.4
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 1.1e-09 67.8 159 36.5
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 1.4e-09 67.4 178 29.8
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 1.4e-09 67.4 39 74.4
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 1.4e-09 67.4 39 74.4
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 1.9e-09 67.0 44 70.5
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 2.4e-09 66.6 154 47.4
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 2.4e-09 66.6 36 80.6
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 4.1e-09 65.9 161 31.7
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 4.1e-09 65.9 40 75.0
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 4.1e-09 65.9 39 69.2
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 5.4e-09 65.5 169 32.0
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 5.4e-09 65.5 145 33.1
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 5.4e-09 65.5 49 63.3
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 7.0e-09 65.1 43 67.4
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 7.0e-09 65.1 148 31.1
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 7.0e-09 65.1 139 33.8
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 7.0e-09 65.1 44 68.2
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 9.2e-09 64.7 47 59.6
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 1.6e-08 63.9 41 65.9
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 2.0e-08 63.5 55 52.7
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 4.6e-08 62.4 39 66.7
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 7.8e-08 61.6 45 64.4
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 3.0e-07 59.7 139 31.7
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 6.6e-07 58.5 151 42.4
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 1.9e-06 57.0 40 60.0
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 5.6e-06 55.5 48 47.9


User provided reference genes

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