Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.3e-84 313.5 162 100.0
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 9.3e-84 313.5 162 100.0
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 6.9e-79 297.4 162 96.9
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.4e-78 295.0 162 95.1
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 2.1e-56 222.6 178 76.4
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 1.1e-39 167.2 145 65.5
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 2.6e-38 162.5 163 59.5
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 2.6e-38 162.5 172 55.8
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 2.5e-36 156.0 106 70.8
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.1e-35 152.9 111 64.9
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.4e-34 150.2 114 65.8
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 3.0e-34 149.1 119 65.5
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 3.0e-34 149.1 121 64.5
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 3.3e-33 145.6 123 61.8
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 3.3e-33 145.6 117 66.7
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 7.4e-33 144.4 167 55.1
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 2.8e-32 142.5 78 83.3
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 3.7e-32 142.1 119 62.2
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 4.8e-32 141.7 111 64.9
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 6.3e-32 141.4 110 64.5
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 8.2e-32 141.0 137 58.4
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.1e-31 140.6 101 69.3
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.1e-31 140.6 111 59.5
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.4e-31 140.2 81 79.0
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.8e-31 139.8 81 77.8
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.2e-30 137.1 80 77.5
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.2e-30 137.1 130 56.9
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 1.2e-30 137.1 114 62.3
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 1.2e-30 137.1 153 52.9
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.0e-30 136.3 87 73.6
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.0e-30 136.3 120 60.0
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.0e-30 136.3 92 69.6
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 2.6e-30 136.0 115 61.7
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.5e-30 135.6 77 79.2
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 3.5e-30 135.6 131 55.7
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 5.9e-30 134.8 101 63.4
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 5.9e-30 134.8 108 61.1
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 5.9e-30 134.8 163 51.5
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 5.9e-30 134.8 113 59.3
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 5.9e-30 134.8 121 58.7
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 7.7e-30 134.4 120 59.2
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 7.7e-30 134.4 120 58.3
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 1.0e-29 134.0 108 63.0
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.0e-29 134.0 108 63.9
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.0e-29 134.0 108 63.9
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.0e-29 134.0 121 62.0
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.3e-29 133.7 118 59.3
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.3e-29 133.7 81 72.8
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.3e-29 133.7 122 57.4
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.7e-29 133.3 106 65.1
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.2e-29 132.9 76 77.6
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 3.8e-29 132.1 110 59.1
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 8.5e-29 131.0 79 72.2
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 8.5e-29 131.0 161 47.2
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.1e-28 130.6 117 58.1
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.1e-28 130.6 77 77.9
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.1e-28 130.6 77 74.0
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.5e-28 130.2 114 59.6
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.5e-28 129.4 101 56.4
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 2.5e-28 129.4 163 47.9
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.2e-28 129.0 77 74.0
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 4.2e-28 128.6 170 47.1
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 4.2e-28 128.6 77 75.3
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 4.2e-28 128.6 119 56.3
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 5.5e-28 128.3 77 75.3
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 5.5e-28 128.3 77 75.3
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 5.5e-28 128.3 117 58.1
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 7.2e-28 127.9 77 75.3
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 9.4e-28 127.5 130 54.6
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 9.4e-28 127.5 90 67.8
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 9.4e-28 127.5 90 67.8
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 9.4e-28 127.5 74 78.4
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 1.2e-27 127.1 130 51.5
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.6e-27 126.7 165 48.5
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 1.6e-27 126.7 79 75.9
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.6e-27 126.7 109 57.8
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 3.6e-27 125.6 78 75.6
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 4.7e-27 125.2 83 72.3
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 6.1e-27 124.8 99 55.6
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 8.0e-27 124.4 156 44.9
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 1.0e-26 124.0 70 84.3
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.0e-26 124.0 72 76.4
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.4e-26 123.6 115 54.8
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 2.3e-26 122.9 188 43.6
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 2.3e-26 122.9 104 64.4
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 2.3e-26 122.9 185 43.2
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 3.0e-26 122.5 190 43.7
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 5.2e-26 121.7 107 56.1
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 8.8e-26 120.9 190 43.2
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.5e-25 120.2 78 67.9
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 7.5e-25 117.9 79 64.6
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 9.7e-25 117.5 96 62.5
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 4.8e-24 115.2 84 66.7
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.1e-23 114.0 132 45.5
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 1.1e-23 114.0 110 52.7
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.4e-23 113.6 128 50.0
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 1.4e-23 113.6 101 57.4
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.8e-23 113.2 116 55.2
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.4e-23 112.8 90 61.1
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 2.4e-23 112.8 84 64.3
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 2.4e-23 112.8 79 69.6
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.4e-23 112.8 106 56.6
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 4.1e-23 112.1 157 47.1
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 4.1e-23 112.1 112 55.4
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.0e-23 111.3 68 70.6
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 9.1e-23 110.9 117 51.3
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.2e-22 110.5 78 61.5
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.2e-22 110.5 112 55.4
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.0e-22 109.8 125 46.4
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.0e-22 109.8 66 71.2
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.0e-22 109.8 66 71.2
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 2.0e-22 109.8 111 55.9
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 2.0e-22 109.8 128 45.3
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 2.7e-22 109.4 82 61.0
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 2.7e-22 109.4 93 52.7
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 3.5e-22 109.0 84 60.7
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 7.7e-22 107.8 78 66.7
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.3e-21 107.1 99 52.5
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.3e-21 107.1 116 52.6
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.3e-21 107.1 153 41.8
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 2.2e-21 106.3 84 60.7
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 3.8e-21 105.5 78 65.4
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 5.0e-21 105.1 116 50.9
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 8.5e-21 104.4 78 64.1
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.1e-20 104.0 84 60.7
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 1.5e-20 103.6 101 52.5
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 1.9e-20 103.2 129 47.3
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 4.2e-20 102.1 95 50.5
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 9.4e-20 100.9 108 54.6
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 9.4e-20 100.9 108 54.6
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 8.0e-19 97.8 105 48.6
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 3.0e-18 95.9 77 55.8
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 8.8e-18 94.4 148 39.9
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 8.8e-18 94.4 112 41.1
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 1.7e-16 90.1 94 48.9
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.8e-16 89.4 109 45.0
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.1e-15 87.4 60 65.0
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.1e-15 87.4 165 37.0
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.4e-15 87.0 151 39.7
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.4e-15 87.0 151 39.7
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 4.1e-15 85.5 117 41.9
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 4.1e-15 85.5 65 64.6
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 2.0e-09 66.6 103 41.7
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 5.7e-09 65.1 77 48.1
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 5.4e-07 58.5 43 65.1
CDE12G0350 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.7e-06 56.2 115 39.1


User provided reference genes

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