Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1746.5 847 100.0
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1716.8 847 97.9
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1707.6 847 97.6
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1703.0 847 97.3
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1699.1 847 97.2
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1694.5 847 97.2
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1651.0 845 94.1
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1474.5 846 84.0
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1474.1 841 84.4
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1459.1 839 83.8
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1372.8 849 78.3
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1355.1 844 77.7
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1342.4 838 77.9
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1336.6 837 77.1
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1332.8 846 77.2
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1322.0 845 74.1
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1315.8 835 76.0
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1313.9 840 75.2
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1312.7 841 74.8
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1312.4 841 75.3
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1309.7 978 67.3
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1309.3 845 74.4
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1308.5 842 74.8
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1298.9 835 74.3
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1297.7 834 74.0
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1297.3 845 73.7
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1295.8 847 73.2
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1293.9 834 74.3
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 844 73.9
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 835 74.3
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1291.9 835 75.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1291.2 844 73.7
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1290.4 843 73.9
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1290.4 834 74.5
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1290.0 841 73.1
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1288.5 847 72.8
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1288.5 833 74.2
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1286.2 835 74.1
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1282.7 843 73.5
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1282.3 834 73.5
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1281.2 838 72.6
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1280.8 837 73.7
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1280.8 836 74.4
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1275.0 837 73.6
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1271.1 839 72.9
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1269.6 835 73.4
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1269.2 836 73.4
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1268.4 870 70.6
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1266.1 842 72.6
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1263.4 840 72.9
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1263.4 845 72.1
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1262.3 837 73.0
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1262.3 834 72.5
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1259.2 833 72.3
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1258.0 831 73.2
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1257.7 834 72.8
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 835 73.2
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1256.5 841 71.2
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1256.5 847 71.7
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1255.7 834 72.8
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1253.0 838 71.8
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1251.1 836 71.9
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1250.3 836 72.0
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1245.0 838 71.1
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1240.3 848 72.8
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1228.0 838 71.0
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1225.7 862 69.5
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1224.2 840 70.1
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1223.0 836 70.8
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1208.4 783 75.2
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1192.2 836 68.7
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1191.4 854 69.6
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1176.0 839 68.9
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1175.6 861 68.4
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1168.3 950 62.1
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1164.4 845 66.6
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1155.2 731 75.6
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1150.6 848 66.0
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1148.7 840 65.0
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1147.5 841 66.1
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1146.7 845 66.0
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1144.4 841 65.8
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1144.4 845 65.9
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 842 66.2
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1143.6 840 65.8
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1141.7 842 65.4
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1140.9 755 72.7
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1140.9 834 66.2
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1139.4 840 65.7
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1139.0 845 65.7
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1138.6 837 64.9
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1138.3 849 66.0
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1137.1 842 65.1
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1133.6 844 65.4
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1100.1 841 63.7
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1077.4 837 63.2
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 4.2e-305 1051.2 674 74.5
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 2.3e-298 1028.9 838 60.5
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.1e-280 969.1 654 71.7
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 3.1e-271 938.7 837 58.3
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.6e-264 916.4 563 76.7
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 3.3e-249 865.5 898 49.3
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.8e-247 859.8 856 52.0
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 3.4e-246 855.5 870 50.1
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.1e-217 760.8 837 49.0
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.4e-175 620.9 470 64.3
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.7e-173 614.0 397 73.0
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.6e-150 537.7 400 66.2
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.4e-138 498.0 364 65.1
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.1e-135 488.4 359 63.5
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.5e-121 441.4 264 79.2
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 7.9e-118 429.1 309 72.8
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 8.2e-107 392.5 865 32.8
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 3.1e-106 390.6 842 34.9
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 7.7e-105 386.0 496 46.6
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.2e-103 380.2 236 76.3
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.3e-99 368.6 1188 26.3
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 1.4e-98 365.2 1008 29.6
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 1.5e-95 355.1 192 87.5
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 6.7e-93 346.3 301 56.8
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.1e-92 345.5 274 60.2
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.7e-92 343.2 195 78.5
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.9e-87 328.2 202 77.2
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 7.5e-84 316.2 245 67.3
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.0e-69 269.2 589 33.8
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 1.3e-51 209.1 217 50.2
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.3e-47 194.1 159 57.9
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 1.4e-45 189.1 571 28.9
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 1.4e-45 189.1 571 28.9
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.5e-36 159.1 101 72.3
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.5e-36 159.1 132 62.1
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 4.4e-36 157.5 105 70.5
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.4e-29 136.0 70 88.6
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 1.2e-28 132.9 97 67.0
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.2e-28 132.9 84 75.0
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 9.3e-26 123.2 210 39.5
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.7e-24 119.0 69 78.3
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 8.1e-22 110.2 60 85.0
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 2.0e-20 105.5 120 45.0
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.4e-20 104.8 62 69.4
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 2.9e-19 101.7 112 53.6
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 6.4e-19 100.5 77 59.7
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 9.3e-18 96.7 53 79.2
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.5e-17 94.7 64 67.2
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 2.3e-16 92.0 111 49.5
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 5.6e-15 87.4 87 57.5
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 9.6e-15 86.7 99 46.5
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.7e-11 75.9 58 51.7
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.1e-10 73.2 103 37.9
PRCOL_00003955 Prasinoderma coloniale HOM05D017291 ORTHO05D017328 1.8e-08 65.9 252 25.4
RcHm_v2.0_Chr7g0200991 Rosa chinensis HOM05D004962 ORTHO05D006249 3.3e-07 61.6 32 90.6
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 4.3e-07 61.2 118 30.5
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 4.3e-07 61.2 132 27.3
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 5.7e-07 60.8 174 28.2
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 1.3e-06 59.7 118 29.7
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 1.6e-06 59.3 170 27.1
Aqoxy4G00048 Aquilegia oxysepala HOM05D001610 ORTHO05D001585 2.1e-06 58.9 143 31.5
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 2.1e-06 58.9 118 28.8
COL.COLO4_29887 Corchorus olitorius HOM05D001610 ORTHO05D001585 4.8e-06 57.8 181 26.0


User provided reference genes

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