Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.6e-188 662.5 517 100.0
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 5.6e-183 644.8 517 98.5
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.0e-169 598.2 517 93.2
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.1e-160 568.5 498 95.2
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.9e-159 566.6 517 89.6
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 6.9e-125 451.8 534 76.6
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.7e-118 430.6 421 95.2
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 5.5e-114 415.6 534 76.2
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 7.0e-109 398.7 555 71.7
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.5e-98 364.4 188 100.0
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 2.1e-97 360.5 532 63.7
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.9e-94 349.4 527 68.7
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.1e-93 348.2 524 70.4
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.7e-91 340.9 520 67.9
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 5.0e-91 339.3 516 64.9
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.0e-91 339.3 527 67.7
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 8.6e-91 338.6 524 67.9
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.5e-90 337.8 565 63.2
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.5e-90 337.8 522 62.1
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.9e-90 337.4 571 64.6
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 5.6e-90 335.9 522 68.2
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 9.5e-90 335.1 563 66.4
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.8e-89 333.6 534 67.0
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 2.8e-89 333.6 525 65.1
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 4.7e-89 332.8 523 67.1
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 6.1e-89 332.4 519 69.0
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.4e-88 331.3 569 63.3
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 2.3e-88 330.5 520 63.5
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 3.0e-88 330.1 529 69.0
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 8.9e-88 328.6 536 66.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 7.0e-85 318.9 599 63.1
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.0e-84 317.4 555 62.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 6.0e-84 315.8 529 48.2
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 6.0e-84 315.8 599 63.6
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 7.8e-84 315.5 566 63.8
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 1.1e-82 311.6 553 64.2
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.1e-82 311.6 558 64.7
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 2.5e-82 310.5 602 58.0
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.5e-82 308.5 540 66.5
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.8e-81 307.0 522 70.9
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 2.3e-80 303.9 539 59.4
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.5e-79 301.2 427 71.4
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 3.4e-79 300.1 556 54.7
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.7e-78 297.7 539 58.4
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 4.9e-78 296.2 485 63.3
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.9e-78 296.2 520 64.2
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 6.4e-78 295.8 193 90.2
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 8.3e-78 295.4 551 60.3
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 4.1e-77 293.1 551 65.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.7e-76 290.4 484 62.6
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 2.7e-76 290.4 422 66.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.3e-75 288.1 188 80.3
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 5.1e-75 286.2 425 70.1
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 8.6e-75 285.4 562 63.0
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.5e-74 284.6 190 77.9
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 4.3e-74 283.1 543 52.3
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 4.3e-74 283.1 186 80.1
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 5.6e-74 282.7 427 75.6
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 9.5e-74 282.0 539 62.7
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.2e-73 281.6 570 59.6
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.1e-72 278.5 556 54.3
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 5.2e-72 276.2 529 60.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 6.8e-72 275.8 570 59.5
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 8.9e-72 275.4 525 65.7
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 8.9e-72 275.4 558 52.5
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.9e-72 275.4 529 65.8
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.5e-71 274.6 547 61.4
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.5e-71 274.6 572 52.3
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.5e-71 274.6 196 75.5
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 4.4e-71 273.1 567 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 5.8e-71 272.7 185 76.8
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 5.8e-71 272.7 531 57.4
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 5.8e-71 272.7 177 79.7
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 7.5e-71 272.3 404 59.9
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 2.2e-70 270.8 543 60.8
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 4.9e-70 269.6 190 77.4
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 6.4e-70 269.2 424 67.0
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 8.3e-70 268.9 422 73.9
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 8.3e-70 268.9 180 79.4
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.1e-69 268.5 159 84.9
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.1e-69 268.5 529 65.4
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.9e-69 267.7 570 59.1
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 4.1e-69 266.5 618 53.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.1e-69 265.8 439 63.1
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 7.1e-69 265.8 550 61.8
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.2e-68 265.0 435 71.0
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.6e-68 264.6 441 70.5
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.1e-68 264.2 418 66.5
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 3.5e-68 263.5 499 52.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.6e-68 263.1 523 60.0
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 6.0e-68 262.7 427 74.5
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.3e-67 261.5 565 57.9
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.7e-67 261.2 575 55.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.3e-67 260.8 150 86.0
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.3e-67 260.8 583 56.1
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.9e-67 260.0 191 73.8
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 3.9e-67 260.0 516 51.7
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 5.1e-67 259.6 423 72.6
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.5e-66 258.1 161 82.0
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-66 257.7 418 58.9
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.9e-66 257.7 429 71.8
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 1.9e-66 257.7 564 58.7
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 4.3e-66 256.5 485 65.2
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 4.3e-66 256.5 420 73.8
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 9.5e-66 255.4 426 72.3
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.2e-65 255.0 159 83.0
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.6e-65 254.6 177 77.4
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.1e-64 251.9 158 81.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.1e-64 251.9 168 77.4
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.4e-64 251.5 187 72.2
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 3.1e-64 250.4 556 64.0
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 4.0e-64 250.0 417 59.0
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.5e-63 248.1 532 61.3
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.5e-63 248.1 179 74.9
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 9.9e-63 245.4 398 60.8
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.2e-62 244.2 419 63.2
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.2e-62 244.2 419 72.1
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 3.8e-62 243.4 183 70.5
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 3.8e-62 243.4 174 71.8
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 5.4e-61 239.6 419 61.8
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 5.4e-61 239.6 580 51.6
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 7.1e-61 239.2 417 60.4
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-60 238.0 418 62.4
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 4.6e-60 236.5 157 76.4
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-58 231.1 134 84.3
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-58 230.7 126 88.9
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 4.3e-58 229.9 133 85.0
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.1e-57 227.6 571 48.7
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 8.1e-57 225.7 133 83.5
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-56 224.9 166 70.5
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 9.0e-56 222.2 130 83.8
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 9.0e-56 222.2 131 86.3
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.4e-55 220.3 185 65.4
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-55 219.9 183 65.0
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 5.8e-55 219.5 133 81.2
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 5.8e-55 219.5 419 58.0
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 5.8e-55 219.5 130 83.1
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-53 214.2 183 64.5
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-52 211.8 181 65.2
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-52 211.8 419 54.7
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-52 211.8 181 65.2
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.6e-52 211.5 387 57.1
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.3e-51 207.6 419 37.9
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.4e-48 197.6 184 63.0
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.3e-46 191.8 388 61.1
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 2.2e-46 191.0 190 58.9
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.4e-45 188.3 135 73.3
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 6.7e-43 179.5 150 66.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 9.6e-42 175.6 124 74.2
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 6.2e-41 172.9 101 86.1
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-40 171.8 133 69.2
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 6.9e-40 169.5 142 69.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 5.8e-39 166.4 106 79.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-37 161.4 104 76.0
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.0e-35 155.6 91 84.6
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.3e-34 150.6 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 2.0e-31 141.4 164 51.2
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 3.8e-30 137.1 85 78.8
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.9e-29 134.8 72 91.7
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 2.5e-29 134.4 85 77.6
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.6e-28 131.7 103 58.3
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.9e-26 124.8 181 48.1
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 9.7e-26 122.5 86 69.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-25 120.9 86 68.6
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 4.5e-23 113.6 56 98.2
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.1e-21 109.0 65 81.5
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 2.5e-21 107.8 69 76.8
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-20 105.1 69 75.4
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 6.1e-20 103.2 52 96.2
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.0e-19 100.9 403 50.4
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-18 99.0 56 89.3
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-18 97.8 69 72.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 4.3e-18 97.1 52 90.4
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.1e-16 92.4 151 42.4
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 8.5e-14 82.8 179 40.8
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 2.2e-09 68.2 92 51.1
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-08 65.5 80 52.5
FAN09G4110 Fragaria x ananassa HOM05D000241 ORTHO05D000237 1.8e-08 65.1 34 91.2
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-06 58.9 59 59.3
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 2.2e-06 58.2 67 50.7


User provided reference genes

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