Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.3e-113 411.8 211 100.0
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 3.6e-112 408.3 210 99.0
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.4e-111 406.4 210 98.6
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 1.3e-106 389.8 210 94.3
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 2.9e-85 318.9 209 77.5
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 2.4e-84 315.8 209 78.5
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 5.1e-82 308.1 209 77.0
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 2.8e-80 302.4 210 72.4
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 2.7e-75 285.8 210 70.5
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 2.7e-75 285.8 210 68.6
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 4.6e-75 285.0 210 68.6
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 6.0e-75 284.6 205 70.2
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.3e-74 283.5 210 70.0
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.3e-74 283.5 209 70.3
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.3e-74 283.5 159 91.8
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 1.3e-74 283.5 210 70.5
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.3e-74 283.5 210 69.5
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 2.3e-74 282.7 205 72.2
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 3.9e-74 282.0 211 68.2
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 5.1e-74 281.6 209 67.5
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 5.1e-74 281.6 209 67.5
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 8.7e-74 280.8 210 70.0
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.9e-73 279.6 210 66.2
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 2.5e-73 279.3 209 67.0
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 9.6e-73 277.3 205 70.2
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.6e-72 276.6 210 68.1
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 2.1e-72 276.2 208 67.3
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 6.2e-72 274.6 205 68.8
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 6.2e-72 274.6 205 71.2
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 8.1e-72 274.2 205 70.7
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.1e-71 273.9 210 64.8
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.0e-71 271.9 205 69.8
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 4.0e-71 271.9 207 68.1
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 4.0e-71 271.9 205 69.3
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 5.3e-71 271.6 205 67.3
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 6.9e-71 271.2 205 70.2
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.2e-70 270.4 207 68.6
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.6e-70 269.2 207 67.6
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.6e-70 269.2 207 67.6
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 2.6e-70 269.2 208 66.3
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 9.9e-70 267.3 207 67.1
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 1.7e-69 266.5 210 63.8
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 2.2e-69 266.2 210 67.1
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 3.8e-69 265.4 210 64.3
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 6.4e-69 264.6 205 67.8
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 8.4e-69 264.2 205 66.3
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 8.4e-69 264.2 210 63.8
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 8.4e-69 264.2 205 68.3
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.4e-68 263.5 207 66.2
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.9e-68 263.1 210 63.3
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.9e-68 263.1 210 63.3
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 4.2e-68 261.9 205 64.9
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 9.3e-68 260.8 204 67.6
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.2e-67 260.4 201 65.2
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.6e-67 260.0 205 65.4
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.7e-67 259.2 205 62.9
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 3.5e-67 258.8 212 62.3
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 4.6e-67 258.5 205 65.4
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 6.0e-67 258.1 205 66.8
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 6.0e-67 258.1 207 62.8
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.0e-66 257.3 205 63.9
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 1.3e-66 256.9 203 62.1
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.7e-66 256.5 205 64.4
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 3.0e-66 255.8 202 66.8
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.1e-65 253.8 208 62.5
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.5e-65 253.4 208 62.5
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 2.5e-65 252.7 209 61.7
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 5.6e-65 251.5 208 63.0
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 5.6e-65 251.5 208 63.0
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 5.6e-65 251.5 208 63.0
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.6e-64 250.0 208 61.5
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.6e-64 250.0 208 62.5
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.6e-64 250.0 208 62.5
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 4.8e-64 248.4 208 62.0
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 4.8e-64 248.4 208 59.1
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 6.2e-64 248.1 208 61.5
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 6.2e-64 248.1 201 65.2
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 6.2e-64 248.1 213 62.0
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 2.4e-63 246.1 208 62.0
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 4.0e-63 245.4 208 62.0
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 1.5e-62 243.4 209 61.7
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 2.0e-62 243.0 202 64.4
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 4.5e-62 241.9 207 60.9
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 4.5e-62 241.9 206 64.6
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.5e-62 241.9 205 63.9
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 5.8e-62 241.5 209 61.2
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 7.6e-62 241.1 208 59.6
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.3e-61 240.4 205 62.4
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.7e-61 240.0 208 61.5
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.2e-61 239.6 204 58.3
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 3.8e-61 238.8 205 62.0
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 4.9e-61 238.4 205 61.5
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 6.4e-61 238.0 207 60.4
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 8.4e-61 237.7 205 60.5
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.4e-60 236.9 205 61.0
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.4e-60 236.9 202 62.9
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.4e-60 236.1 202 63.4
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 3.2e-60 235.7 209 57.4
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 5.4e-60 235.0 209 56.5
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 5.4e-60 235.0 202 62.4
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 9.3e-60 234.2 202 62.9
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 7.9e-59 231.1 206 62.1
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.3e-58 230.3 202 59.9
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 2.5e-57 226.1 204 59.3
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 4.3e-57 225.3 205 60.5
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.3e-56 223.8 200 58.5
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.6e-56 223.4 205 59.5
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.8e-56 222.6 232 53.0
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 1.1e-55 220.7 205 59.0
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 3.1e-55 219.2 204 59.8
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 6.9e-55 218.0 212 56.1
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 5.8e-54 214.9 200 58.0
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.1e-52 210.7 208 52.9
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.4e-52 210.3 147 70.1
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 1.6e-51 206.8 205 57.6
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 5.7e-49 198.4 209 52.2
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 9.0e-47 191.0 206 52.4
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 1.7e-45 186.8 217 49.8
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 2.2e-45 186.4 202 53.5
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.1e-36 157.5 113 63.7
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 2.5e-36 156.4 208 45.2
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.1e-35 153.3 112 58.9
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.1e-33 147.5 156 51.9
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.1e-33 147.5 212 39.2
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 7.4e-33 144.8 169 46.2
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 9.7e-33 144.4 159 45.9
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.2e-32 143.3 209 37.3
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 2.8e-32 142.9 136 56.6
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 2.8e-32 142.9 216 37.5
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 6.3e-32 141.7 205 39.5
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.3e-32 141.7 187 48.7
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.8e-31 140.2 187 48.1
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.4e-31 139.8 211 37.0
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 6.5e-29 131.7 208 34.6
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 7.2e-28 128.3 213 37.6
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.0e-26 122.9 161 49.1
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 5.0e-13 79.0 81 54.3
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.5e-13 78.2 78 56.4
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.6e-11 73.9 167 34.7


User provided reference genes

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