Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.5e-161 572.8 293 100.0
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 3.4e-129 465.3 284 88.0
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 5.7e-124 448.0 279 84.6
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.2e-123 446.0 234 97.0
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 5.9e-121 438.0 280 83.6
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 7.4e-116 421.0 239 91.2
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.2e-115 419.5 239 90.8
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 9.4e-103 377.5 297 69.0
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.0e-100 369.8 294 68.7
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 5.5e-95 351.7 297 65.0
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.5e-92 343.6 293 63.5
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-90 337.4 276 63.4
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.8e-90 336.7 276 63.4
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.4e-90 336.3 276 63.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 5.4e-90 335.1 276 63.0
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 5.4e-90 335.1 291 62.2
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.0e-90 334.7 278 64.0
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.7e-89 332.8 276 63.0
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.0e-88 330.9 277 62.8
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.1e-87 327.4 285 61.1
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.9e-87 326.6 277 60.6
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 7.3e-87 324.7 271 62.4
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 3.6e-86 322.4 315 58.1
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 6.1e-86 321.6 278 63.3
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.0e-85 320.9 278 62.9
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.4e-85 320.5 279 62.7
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 6.8e-85 318.2 312 58.0
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 6.8e-85 318.2 318 57.2
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-84 317.4 278 61.2
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.5e-84 317.0 297 58.2
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 1.5e-84 317.0 313 59.4
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 2.0e-84 316.6 268 63.4
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.7e-83 313.5 299 57.5
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 2.2e-83 313.2 290 57.6
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 2.9e-83 312.8 282 61.0
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.9e-83 312.0 279 59.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 6.4e-83 311.6 304 58.2
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 6.4e-83 311.6 294 58.8
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 6.4e-83 311.6 245 65.7
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.1e-82 310.8 270 60.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 5.4e-82 308.5 298 54.7
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 7.0e-82 308.1 275 60.0
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 2.0e-81 306.6 301 56.1
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.7e-81 306.2 302 57.6
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.0e-80 304.3 269 59.9
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 3.9e-80 302.4 301 55.8
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 3.9e-80 302.4 289 56.4
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 8.6e-80 301.2 301 54.2
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 8.6e-80 301.2 289 56.4
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 1.1e-79 300.8 313 54.0
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.1e-79 300.8 307 54.7
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.9e-79 300.1 300 56.7
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 9.5e-79 297.7 322 51.6
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 2.1e-78 296.6 277 57.0
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.8e-78 296.2 316 54.4
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 3.6e-78 295.8 273 59.0
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.6e-78 295.8 294 55.8
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 3.6e-78 295.8 278 56.5
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 4.7e-78 295.4 321 53.3
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.1e-77 292.7 292 56.8
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 2.6e-76 289.7 270 56.7
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 2.6e-76 289.7 270 56.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.6e-76 289.7 278 55.8
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 2.6e-76 289.7 221 67.0
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 9.8e-76 287.7 226 65.0
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.3e-75 287.3 294 55.4
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-75 287.3 240 63.8
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 2.2e-75 286.6 278 55.8
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.9e-75 286.2 270 57.4
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 4.9e-75 285.4 272 57.4
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 6.4e-75 285.0 296 54.1
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 6.4e-75 285.0 285 53.0
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.4e-74 283.9 254 60.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.9e-74 283.5 263 56.7
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.4e-74 283.1 291 54.3
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.4e-74 283.1 291 54.0
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 9.2e-74 281.2 260 56.5
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.2e-73 280.8 273 56.4
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.2e-73 280.8 327 51.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.6e-73 280.4 282 53.5
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.1e-73 280.0 299 51.8
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 4.6e-73 278.9 286 56.3
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 6.0e-73 278.5 314 50.3
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 1.1e-71 274.2 185 74.1
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.3e-71 272.7 225 62.7
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.6e-70 270.4 226 61.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.8e-70 269.6 227 64.3
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 8.1e-70 268.1 282 53.2
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 6.8e-69 265.0 277 52.7
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.9e-67 259.6 228 59.6
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 4.9e-67 258.8 220 61.8
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.4e-66 257.3 240 56.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 7.8e-65 251.5 230 60.9
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.3e-64 250.0 255 54.5
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.3e-64 250.0 229 56.8
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.3e-63 246.1 204 61.3
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-61 240.7 317 45.7
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-61 240.7 317 45.7
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 4.0e-61 239.2 276 49.6
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 3.4e-60 236.1 257 49.4
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 5.8e-60 235.3 317 45.4
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 3.8e-59 232.6 329 44.1
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 5.4e-58 228.8 286 49.7
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.2e-57 227.6 259 48.6
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.3e-56 223.4 289 45.7
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.9e-56 222.6 243 53.1
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.9e-55 220.3 237 54.4
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.9e-55 220.3 237 54.4
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-54 217.6 230 52.2
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 6.2e-54 215.3 293 44.4
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 1.4e-53 214.2 275 46.2
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.6e-52 209.9 251 49.4
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 3.4e-52 209.5 296 45.6
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.1e-50 204.5 281 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.0e-48 198.0 282 44.3
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 5.6e-47 192.2 292 41.1
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.4e-45 187.6 236 49.2
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 2.4e-45 186.8 260 44.2
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.3e-43 181.0 171 55.6
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.9e-42 177.2 198 52.5
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 7.9e-41 171.8 217 48.4
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 7.9e-41 171.8 131 64.1
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.3e-40 171.0 149 61.1
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.6e-38 164.1 139 63.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.7e-38 162.9 233 44.6
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 4.5e-36 156.0 153 56.2
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.6e-33 147.5 222 44.1
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 2.7e-33 146.7 185 48.6
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 3.5e-33 146.4 277 38.3
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 8.7e-32 141.7 157 50.3
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.1e-31 141.4 255 35.7
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 9.6e-31 138.3 128 58.6
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.8e-29 134.0 112 62.5
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.2e-28 131.3 178 44.4
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 2.2e-27 127.1 102 65.7
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.9e-24 116.3 155 47.1
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 4.3e-23 112.8 142 45.1
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 8.2e-22 108.6 74 68.9
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 5.9e-20 102.4 246 30.5
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 3.9e-16 89.7 182 30.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 6.7e-16 89.0 202 32.7
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.0e-11 75.1 58 62.1


User provided reference genes

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