Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-161 572.8 298 100.0
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-146 522.7 298 91.6
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 3.3e-127 458.8 297 80.8
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.8e-118 429.1 283 78.8
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.0e-117 425.2 294 77.9
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 5.2e-117 424.9 283 79.2
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.3e-111 405.6 292 75.7
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.8e-110 402.5 276 78.6
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 5.3e-109 398.3 274 77.7
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.1e-104 381.7 283 72.8
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.9e-74 283.5 390 45.6
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 7.4e-71 271.6 293 53.2
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 6.9e-69 265.0 298 52.0
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.5e-68 263.8 300 51.0
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 4.2e-66 255.8 151 94.7
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 7.9e-65 251.5 303 49.5
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.3e-64 250.0 300 47.7
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.1e-63 247.7 305 49.8
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 5.7e-63 245.4 299 46.8
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.2e-62 243.4 323 46.1
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 2.2e-62 243.4 313 50.2
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.1e-61 241.1 304 47.7
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.4e-61 240.7 316 46.2
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.1e-61 239.6 305 46.9
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.1e-61 238.0 301 48.5
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 2.6e-60 236.5 297 49.2
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 5.0e-59 232.3 293 50.2
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 5.0e-59 232.3 301 46.5
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 5.5e-58 228.8 273 50.2
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.0e-56 224.6 306 46.7
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 8.8e-56 221.5 306 46.7
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.1e-55 221.1 295 43.7
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.3e-54 217.6 313 46.0
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.3e-54 217.6 285 43.9
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.2e-54 216.9 303 43.2
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.7e-54 216.1 283 47.3
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.4e-53 214.2 290 45.5
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.8e-53 213.8 262 46.9
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 3.1e-53 213.0 294 44.6
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.5e-52 209.1 122 82.8
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.7e-51 207.2 286 44.4
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 2.2e-51 206.8 286 44.4
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 5.0e-51 205.7 299 41.8
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 5.0e-51 205.7 290 43.8
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.5e-51 205.3 303 44.6
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 6.5e-51 205.3 351 40.2
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 6.5e-51 205.3 300 41.3
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 6.5e-51 205.3 313 44.1
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 2.5e-50 203.4 283 42.4
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 3.2e-50 203.0 288 41.3
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 3.2e-50 203.0 300 45.7
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 4.2e-50 202.6 287 42.5
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 7.2e-50 201.8 292 45.5
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.2e-49 201.1 336 40.2
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.6e-49 200.7 340 39.4
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.6e-49 200.7 292 45.5
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.6e-49 200.7 292 45.5
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.7e-49 199.9 289 40.5
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 3.6e-49 199.5 301 43.2
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 3.6e-49 199.5 298 41.9
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 3.6e-49 199.5 302 45.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.0e-48 198.0 299 42.8
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.8e-48 197.2 309 43.0
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 5.2e-48 195.7 284 44.4
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.5e-47 194.1 309 39.5
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.0e-47 193.7 377 35.0
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 2.6e-47 193.4 363 37.7
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 5.7e-47 192.2 289 40.1
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.2e-46 190.3 315 41.3
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.3e-46 188.3 331 39.6
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.1e-45 188.0 287 40.1
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.8e-45 187.2 327 38.8
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 4.1e-45 186.0 319 39.5
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 7.0e-45 185.3 294 44.2
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 9.1e-45 184.9 318 39.0
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.2e-44 184.5 384 36.2
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.7e-44 183.3 320 39.7
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 3.5e-44 183.0 290 38.3
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.5e-44 182.6 337 37.4
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 4.5e-44 182.6 353 35.7
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.3e-43 181.0 286 40.6
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.2e-43 180.3 354 35.9
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.9e-43 179.9 328 37.2
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 3.8e-43 179.5 289 37.7
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 5.0e-43 179.1 300 41.3
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 8.5e-43 178.3 305 40.0
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.5e-42 177.6 298 39.6
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.5e-42 177.6 280 38.2
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.9e-42 177.2 334 38.0
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 4.2e-42 176.0 294 36.1
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 7.2e-42 175.3 357 34.5
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-41 174.1 91 89.0
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.7e-41 173.3 299 37.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 2.7e-41 173.3 312 38.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 4.7e-41 172.6 323 36.2
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 6.1e-41 172.2 300 38.0
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 8.0e-41 171.8 298 41.9
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.0e-40 171.4 235 41.7
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.0e-40 171.4 229 42.8
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.4e-40 171.0 301 40.2
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.4e-40 171.0 302 38.4
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 2.3e-40 170.2 273 41.0
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.3e-40 170.2 291 37.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 5.2e-40 169.1 274 42.7
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.4e-39 166.4 163 55.2
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.8e-38 163.3 378 33.9
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.7e-38 162.9 163 54.0
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.7e-38 162.9 154 50.0
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 6.3e-38 162.2 280 40.4
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 6.3e-38 162.2 277 41.2
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 6.3e-38 162.2 277 41.2
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.8e-37 160.6 166 52.4
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 2.4e-37 160.2 384 32.0
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 9.2e-37 158.3 211 40.8
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.2e-36 157.9 278 38.5
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.2e-36 157.9 278 38.5
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.5e-36 156.4 275 38.2
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 5.9e-36 155.6 251 39.8
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.3e-35 154.5 320 34.4
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 2.3e-35 153.7 242 43.4
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.9e-35 153.3 220 42.3
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.0e-35 152.5 180 47.8
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.1e-34 151.4 277 37.9
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 9.5e-34 148.3 277 39.4
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.6e-33 147.5 267 37.8
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.1e-33 145.6 273 37.0
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.4e-32 144.4 249 36.9
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.4e-32 144.4 243 40.7
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 5.2e-32 142.5 229 41.0
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.2e-31 141.4 242 38.8
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.2e-31 141.4 229 40.2
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.2e-31 141.4 304 35.2
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.0e-31 140.6 350 34.3
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.6e-31 140.2 194 44.3
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.7e-31 139.0 304 33.9
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 5.7e-31 139.0 127 52.0
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 2.9e-30 136.7 170 44.1
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 3.7e-30 136.3 360 31.7
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.2e-28 131.3 272 34.9
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 7.8e-28 128.6 275 36.0
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 7.8e-28 128.6 281 36.7
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.0e-27 128.3 244 35.7
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 1.3e-27 127.9 257 35.8
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.3e-27 127.1 385 29.9
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.5e-26 124.4 347 32.3
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 9.5e-26 121.7 297 33.3
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 9.5e-26 121.7 118 55.9
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 3.1e-24 116.7 257 33.5
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 8.3e-22 108.6 248 34.7
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 4.3e-18 96.3 250 29.2
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.8e-16 90.9 218 33.9
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.7e-14 83.2 326 27.3
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 5.4e-13 79.3 166 35.5
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 2.1e-12 77.4 170 33.5
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.6e-12 76.3 93 44.1
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 8.6e-11 72.0 54 57.4
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.9e-10 70.9 297 28.3
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 8.1e-09 65.5 79 45.6
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 8.9e-08 62.0 166 28.3
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.2e-07 61.6 218 30.7
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 2.0e-07 60.8 155 32.3
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.4e-07 59.7 82 47.6
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.3e-06 58.2 304 27.0
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.3e-06 58.2 125 28.0
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 2.9e-06 57.0 88 39.8


User provided reference genes

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