Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.5e-179 632.1 343 100.0
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 4.9e-175 617.8 343 92.4
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.4e-174 615.5 350 93.7
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 3.7e-151 538.5 348 87.1
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 2.3e-140 502.7 327 86.9
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 8.4e-127 457.6 338 78.4
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 6.3e-98 361.7 357 65.0
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 5.9e-96 355.1 352 60.2
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 1.0e-95 354.4 340 61.2
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 2.5e-94 349.7 332 64.2
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 1.8e-92 343.6 368 61.4
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 6.7e-92 341.7 330 61.8
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 3.7e-90 335.9 332 60.2
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.8e-89 333.6 334 59.6
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 1.7e-87 327.0 334 57.2
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 2.2e-87 326.6 326 57.7
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 2.9e-87 326.2 325 57.8
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 1.4e-86 323.9 335 60.6
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 1.6e-85 320.5 325 56.0
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 2.7e-85 319.7 334 55.1
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 1.0e-84 317.8 323 57.0
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 1.8e-84 317.0 333 56.5
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 1.8e-84 317.0 268 65.3
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 2.3e-84 316.6 334 55.1
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 5.2e-84 315.5 323 57.3
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 1.1e-83 314.3 321 54.8
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 1.5e-83 313.9 328 54.6
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 2.0e-83 313.5 327 55.4
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 2.0e-83 313.5 345 53.9
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 2.6e-83 313.2 345 54.5
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 2.6e-83 313.2 338 56.2
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 3.3e-83 312.8 327 55.0
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 4.4e-83 312.4 325 56.0
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 4.4e-83 312.4 334 58.1
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 7.4e-83 311.6 323 56.0
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 9.7e-83 311.2 325 56.0
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 3.7e-82 309.3 332 55.1
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 1.4e-81 307.4 329 52.9
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 3.1e-81 306.2 320 54.7
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 5.3e-81 305.4 307 58.0
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 9.1e-81 304.7 331 53.2
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 9.1e-81 304.7 281 59.1
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 9.1e-81 304.7 329 55.9
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 1.6e-80 303.9 333 54.4
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.0e-80 303.5 324 55.2
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 7.7e-80 301.6 259 60.6
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 7.7e-80 301.6 329 52.0
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 1.0e-79 301.2 329 52.6
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 1.7e-79 300.4 330 53.3
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 2.2e-79 300.1 315 52.4
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 2.9e-79 299.7 336 52.7
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 8.5e-79 298.1 329 51.1
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 1.9e-78 297.0 330 50.9
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 3.2e-78 296.2 337 50.4
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 3.2e-78 296.2 320 53.1
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 4.2e-78 295.8 341 55.4
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 4.2e-78 295.8 338 53.8
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 5.5e-78 295.4 261 57.9
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 5.5e-78 295.4 261 57.9
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 7.2e-78 295.0 261 57.9
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 1.2e-77 294.3 261 57.9
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 1.6e-77 293.9 325 54.5
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 6.1e-77 292.0 259 60.2
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 8.0e-77 291.6 342 52.3
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 3.0e-76 289.7 275 59.6
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 1.5e-75 287.3 313 55.3
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 2.0e-75 287.0 313 53.0
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 2.6e-75 286.6 320 51.9
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 9.7e-75 284.6 331 51.7
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 1.3e-74 284.3 261 57.5
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 2.2e-74 283.5 262 60.3
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 2.8e-74 283.1 335 51.0
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 6.3e-74 282.0 257 58.4
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 3.1e-73 279.6 252 56.7
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 3.1e-73 279.6 252 56.7
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-73 279.6 283 55.1
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 4.1e-73 279.3 259 57.5
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 9.1e-73 278.1 322 50.9
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 9.1e-73 278.1 320 53.1
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 9.1e-73 278.1 291 53.3
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 1.6e-72 277.3 322 51.6
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 1.0e-71 274.6 337 50.1
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 8.5e-71 271.6 332 49.1
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 8.5e-71 271.6 271 56.8
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 1.9e-70 270.4 325 53.5
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 2.5e-70 270.0 322 54.7
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 3.2e-70 269.6 329 47.7
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 3.2e-70 269.6 329 47.7
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.6e-69 267.3 338 48.2
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 3.6e-69 266.2 322 50.0
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 8.8e-68 261.5 315 53.7
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 1.2e-67 261.2 323 48.0
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 1.2e-67 261.2 278 56.5
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 5.7e-67 258.8 339 48.4
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 2.2e-66 256.9 249 55.0
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 2.8e-66 256.5 318 52.2
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 6.3e-66 255.4 368 45.9
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 8.3e-66 255.0 222 60.8
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 1.4e-60 237.7 333 45.3
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 4.0e-60 236.1 222 58.1
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 2.7e-56 223.4 325 43.7
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 5.9e-56 222.2 275 50.2
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 2.4e-49 200.3 247 46.2
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 9.2e-49 198.4 217 51.2
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 3.0e-47 193.4 251 48.6
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 1.1e-46 191.4 222 50.0
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 7.3e-46 188.7 234 47.0
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 7.3e-46 188.7 311 41.5
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 2.1e-45 187.2 173 60.7
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 1.4e-44 184.5 172 60.5
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.3e-44 183.7 189 55.0
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 2.4e-41 173.7 309 38.8
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 6.0e-40 169.1 249 41.4
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 3.0e-39 166.8 304 42.4
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 9.2e-33 145.2 257 38.1
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 1.2e-32 144.8 241 39.4
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 1.2e-32 144.8 241 39.4
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 3.0e-31 140.2 247 38.9
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 1.3e-23 114.8 237 32.9
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 3.9e-23 113.2 75 76.0
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 1.3e-21 108.2 111 55.0
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 2.2e-18 97.4 221 33.0
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 6.4e-18 95.9 288 28.8
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.3e-07 61.6 81 46.9


User provided reference genes

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