Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0047 Fragaria x ananassa HOM05D009792 ORTHO05D011511 2.4e-144 515.4 240 100.0
FvH4_4g28520 Fragaria vesca HOM05D009792 ORTHO05D009073 1.7e-41 173.7 158 57.0
RcHm_v2.0_Chr4g0436521 Rosa chinensis HOM05D009792 ORTHO05D009073 1.7e-41 173.7 159 56.0
FAN12G2506 Fragaria x ananassa HOM05D009792 ORTHO05D009073 3.8e-41 172.6 158 56.3
FAN22G1459 Fragaria x ananassa HOM05D009792 ORTHO05D009073 4.3e-29 132.5 86 76.7
FAN19G0099 Fragaria x ananassa HOM05D009792 ORTHO05D009073 1.2e-18 97.8 206 35.0
FvH4_1g12771 Fragaria vesca HOM05D000007 ORTHO05D009073 1.0e-17 94.7 201 33.3
MD11G1124100 Malus domestica HOM05D000007 ORTHO05D009073 1.3e-17 94.4 167 34.7
FAN07G2742 Fragaria x ananassa HOM05D009792 ORTHO05D009073 2.9e-17 93.2 82 56.1
FAN22G1157 Fragaria x ananassa HOM05D009792 ORTHO05D009073 1.4e-16 90.9 150 38.7
MD03G1110700 Malus domestica HOM05D000007 ORTHO05D009073 3.2e-16 89.7 147 40.8
FAN16G0179 Fragaria x ananassa HOM05D000007 ORTHO05D009073 7.2e-16 88.6 169 37.3
FAN26G1355 Fragaria x ananassa HOM05D009792 ORTHO05D009073 9.4e-16 88.2 200 32.0
MD16G1019000 Malus domestica HOM05D000007 ORTHO05D009073 4.7e-15 85.9 174 36.2
MD13G1020600 Malus domestica HOM05D000007 ORTHO05D009073 6.1e-15 85.5 176 33.5
FAN07G2591 Fragaria x ananassa HOM05D009792 ORTHO05D009073 1.0e-14 84.7 78 57.7
MD11G1124500 Malus domestica HOM05D009792 ORTHO05D009073 1.8e-14 84.0 201 33.8
MD11G1124200 Malus domestica HOM05D000007 ORTHO05D009073 3.0e-14 83.2 168 35.7
RcHm_v2.0_Chr4g0399251 Rosa chinensis HOM05D000007 ORTHO05D009073 6.7e-14 82.0 114 41.2
Prupe.1G333100 Prunus persica HOM05D000007 ORTHO05D009073 8.8e-14 81.6 202 33.2
Prupe.6G093100 Prunus persica HOM05D000007 ORTHO05D009073 2.6e-13 80.1 147 40.1
FAN07G2472 Fragaria x ananassa HOM05D009792 ORTHO05D009073 5.7e-13 79.0 125 37.6
FAN28G0070 Fragaria x ananassa HOM05D009792 ORTHO05D009073 5.7e-13 79.0 111 39.6
Prupe.1G285300 Prunus persica HOM05D000007 ORTHO05D009073 8.2e-12 75.1 122 41.0
Medtr5g027330 Medicago truncatula HOM05D000007 ORTHO05D000521 1.1e-11 74.7 138 31.9
Prupe.1G283900 Prunus persica HOM05D003015 ORTHO05D009073 1.8e-11 73.9 136 36.0
FAN22G0037 Fragaria x ananassa HOM05D000341 ORTHO05D001197 3.1e-11 73.2 88 46.6
Dinv16557 Davidia involucrata HOM05D000007 ORTHO05D009073 4.1e-11 72.8 169 32.5
Medtr5g027370 Medicago truncatula HOM05D000007 ORTHO05D000521 5.3e-11 72.4 138 31.2
TPR.G18184 Trifolium pratense HOM05D000007 ORTHO05D000521 6.9e-11 72.0 137 35.8
MD02G1067600 Malus domestica HOM05D009792 ORTHO05D009073 1.5e-10 70.9 159 34.6
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 2.0e-10 70.5 177 32.2
TPR.G29403 Trifolium pratense HOM05D000007 ORTHO05D000521 2.0e-10 70.5 150 30.7
FAN17G3095 Fragaria x ananassa HOM05D009792 ORTHO05D001197 3.4e-10 69.7 61 57.4
Medtr5g022040 Medicago truncatula HOM05D000007 ORTHO05D000521 4.5e-10 69.3 138 31.2
FAN22G0060 Fragaria x ananassa HOM05D000007 ORTHO05D009073 1.3e-09 67.8 125 33.6
Actinidia30171 Actinidia chinensis HOM05D000007 ORTHO05D009073 1.7e-09 67.4 169 32.5
TPR.G14415 Trifolium pratense HOM05D000007 ORTHO05D000521 1.7e-09 67.4 147 32.7
TPR.G30748 Trifolium pratense HOM05D000007 ORTHO05D000521 2.2e-09 67.0 140 32.9
FvH4_4g34271 Fragaria vesca HOM05D000007 ORTHO05D009073 2.9e-09 66.6 121 33.9
Medtr5g021880 Medicago truncatula HOM05D000007 ORTHO05D000521 2.9e-09 66.6 135 34.8
Medtr6g046320 Medicago truncatula HOM05D000007 ORTHO05D000521 2.9e-09 66.6 156 30.1
FvH4_7g33810 Fragaria vesca HOM05D000007 ORTHO05D009073 3.8e-09 66.2 155 30.3
FAN01G1574 Fragaria x ananassa HOM05D000007 ORTHO05D009073 3.8e-09 66.2 155 30.3
FAN07G1816 Fragaria x ananassa HOM05D009792 ORTHO05D009073 5.0e-09 65.9 82 45.1
Medtr4g027370 Medicago truncatula HOM05D000007 ORTHO05D000521 5.0e-09 65.9 135 32.6
Medtr5g021860 Medicago truncatula HOM05D000007 ORTHO05D000521 6.5e-09 65.5 135 32.6
Medtr5g007940 Medicago truncatula HOM05D000007 ORTHO05D000521 8.5e-09 65.1 136 33.8
HanXRQChr05g0146361 Helianthus annuus HOM05D000171 ORTHO05D009073 1.4e-08 64.3 125 31.2
Medtr7g117100 Medicago truncatula HOM05D000007 ORTHO05D000521 1.9e-08 63.9 139 33.8
Cfa009048 Carpinus fangiana HOM05D009398 ORTHO05D011511 2.5e-08 63.5 133 30.1
FAN07G2491 Fragaria x ananassa HOM05D000007 ORTHO05D009073 2.5e-08 63.5 127 32.3
PSO824G0099 Papaver somniferum HOM05D000007 ORTHO05D000676 2.5e-08 63.5 128 30.5
Ca_24912_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000521 3.2e-08 63.2 162 27.2
Ca_24932_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000521 3.2e-08 63.2 162 27.2
COL.COLO4_15974 Corchorus olitorius HOM05D000007 ORTHO05D000521 3.2e-08 63.2 127 33.9
RcHm_v2.0_Chr2g0138411 Rosa chinensis HOM05D000007 ORTHO05D022672 3.2e-08 63.2 147 38.1
FvH4_4g07100 Fragaria vesca HOM05D000007 ORTHO05D009073 4.2e-08 62.8 147 34.0
Atru.chr4.13 Acer truncatum HOM05D000007 ORTHO05D000521 5.5e-08 62.4 139 34.5
HanXRQChr07g0189371 Helianthus annuus HOM05D000171 ORTHO05D009073 7.2e-08 62.0 141 29.8
Psat0s3499g0040 Pisum sativum HOM05D000007 ORTHO05D000521 7.2e-08 62.0 122 32.8
QL03p066111 Quercus lobata HOM05D009398 ORTHO05D011511 7.2e-08 62.0 153 30.7
TPR.G4156 Trifolium pratense HOM05D000007 ORTHO05D000521 7.2e-08 62.0 186 29.0
FAN07G1149 Fragaria x ananassa HOM05D000007 ORTHO05D000521 9.4e-08 61.6 112 40.2
Medtr5g010550 Medicago truncatula HOM05D000007 ORTHO05D000521 9.4e-08 61.6 150 31.3
Medtr5g010610 Medicago truncatula HOM05D000007 ORTHO05D000521 9.4e-08 61.6 165 29.1
ECA246G2528 Erigeron canadensis HOM05D000007 ORTHO05D009073 1.2e-07 61.2 180 26.1
Prupe.1G146900 Prunus persica HOM05D000007 ORTHO05D000521 1.2e-07 61.2 143 37.1
Prupe.1G300900 Prunus persica HOM05D015152 ORTHO05D009073 1.2e-07 61.2 125 35.2
FAN19G2482 Fragaria x ananassa HOM05D000007 ORTHO05D005026 1.6e-07 60.8 109 31.2
FAN26G0358 Fragaria x ananassa HOM05D000091 ORTHO05D022672 1.6e-07 60.8 148 35.1
TPR.G33734 Trifolium pratense HOM05D000007 ORTHO05D000521 1.6e-07 60.8 120 35.8
A04p24670 Brassica napus HOM05D000171 ORTHO05D000101 2.1e-07 60.5 113 31.9
C04p61570 Brassica napus HOM05D000171 ORTHO05D000101 2.1e-07 60.5 113 31.9
FAN26G1853 Fragaria x ananassa HOM05D000007 ORTHO05D005026 2.1e-07 60.5 103 34.0
SalBow1G3631 Salvia bowleyana HOM05D000007 ORTHO05D000017 2.1e-07 60.5 136 30.1
BcaC02g07953 Brassica carinata HOM05D000171 ORTHO05D000101 2.7e-07 60.1 112 32.1
Prupe.1G285500 Prunus persica HOM05D000007 ORTHO05D009073 2.7e-07 60.1 126 37.3
Rhsim04G0086800 Rhododendron simsii HOM05D000171 ORTHO05D000101 2.7e-07 60.1 181 26.5
PSO832G1958 Papaver somniferum HOM05D000007 ORTHO05D000676 3.6e-07 59.7 111 31.5
HanXRQChr04g0094081 Helianthus annuus HOM05D000007 ORTHO05D000017 4.7e-07 59.3 156 29.5
QL03p068470 Quercus lobata HOM05D009398 ORTHO05D011511 4.7e-07 59.3 123 30.9
Rhsim04G0093700 Rhododendron simsii HOM05D000007 ORTHO05D009073 6.1e-07 58.9 183 27.3
Rhsim07G0063500 Rhododendron simsii HOM05D000007 ORTHO05D000521 6.1e-07 58.9 147 30.6
COL.COLO4_13967 Corchorus olitorius HOM05D000007 ORTHO05D000521 8.0e-07 58.5 141 35.5
PSO339G4553 Papaver somniferum HOM05D000007 ORTHO05D000017 8.0e-07 58.5 134 32.1
Rhsim04G0080900 Rhododendron simsii HOM05D000007 ORTHO05D000039 8.0e-07 58.5 138 26.1
FvH4_3g19151 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-06 58.2 118 32.2
FAN11G0276 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.0e-06 58.2 118 32.2
Medtr5g010560 Medicago truncatula HOM05D000007 ORTHO05D000521 1.0e-06 58.2 148 30.4
Psat2g140960 Pisum sativum HOM05D000007 ORTHO05D000521 1.0e-06 58.2 151 27.2
vmacro09383 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 1.0e-06 58.2 154 33.8
vmacro12514 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 1.0e-06 58.2 143 32.9
COL.COLO4_23193 Corchorus olitorius HOM05D000007 ORTHO05D000521 1.4e-06 57.8 135 37.8
Haze_12078 Corylus avellana HOM05D009398 ORTHO05D011511 1.4e-06 57.8 113 33.6
RhsimUnG0048800 Rhododendron simsii HOM05D000171 ORTHO05D000101 1.4e-06 57.8 169 27.8
COL.COLO4_16487 Corchorus olitorius HOM05D000007 ORTHO05D000521 1.8e-06 57.4 126 35.7
Haze_04558 Corylus avellana HOM05D000007 ORTHO05D000521 1.8e-06 57.4 152 28.9
DCAR_011586 Daucus carota HOM05D000007 ORTHO05D009073 1.8e-06 57.4 161 27.3
PSO421G0154 Papaver somniferum HOM05D000007 ORTHO05D000676 1.8e-06 57.4 178 25.8
PSO421G0462 Papaver somniferum HOM05D000007 ORTHO05D000676 1.8e-06 57.4 178 25.8
PSO421G0646 Papaver somniferum HOM05D000007 ORTHO05D000676 1.8e-06 57.4 178 25.8
Atru.chr3.1786 Acer truncatum HOM05D000007 ORTHO05D000017 2.3e-06 57.0 128 32.0
CSS0009149 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 2.3e-06 57.0 132 32.6
Dinv24586 Davidia involucrata HOM05D000007 ORTHO05D000039 2.3e-06 57.0 138 30.4
FAN07G2424 Fragaria x ananassa HOM05D000007 ORTHO05D009073 2.3e-06 57.0 114 36.0
Medtr5g022750 Medicago truncatula HOM05D000007 ORTHO05D000521 2.3e-06 57.0 142 34.5
CAN.G1036.9 Capsicum annuum HOM05D000007 ORTHO05D000521 3.0e-06 56.6 151 25.8
Cfa006260 Carpinus fangiana HOM05D000007 ORTHO05D000521 3.0e-06 56.6 152 28.9
HanXRQChr04g0095821 Helianthus annuus HOM05D000171 ORTHO05D009073 3.0e-06 56.6 156 28.8
HanXRQChr05g0146381 Helianthus annuus HOM05D000171 ORTHO05D009073 3.0e-06 56.6 129 29.5
FAN23G2618 Fragaria x ananassa HOM05D000007 ORTHO05D022672 3.9e-06 56.2 147 33.3
HanXRQChr05g0137821 Helianthus annuus HOM05D000171 ORTHO05D009073 3.9e-06 56.2 90 33.3
Rhsim07G0064600 Rhododendron simsii HOM05D000007 ORTHO05D000521 3.9e-06 56.2 146 30.8
COL.COLO4_29208 Corchorus olitorius HOM05D000007 ORTHO05D000521 5.2e-06 55.8 134 35.8
Rhsim03G0071900 Rhododendron simsii HOM05D000007 ORTHO05D009073 5.2e-06 55.8 178 24.2
Rhsim08G0210600 Rhododendron simsii HOM05D000171 ORTHO05D000101 5.2e-06 55.8 173 26.6
FvH4_4g07091 Fragaria vesca HOM05D024456 ORTHO05D009073 6.7e-06 55.5 102 35.3
PSO832G2824 Papaver somniferum HOM05D000007 ORTHO05D000676 6.7e-06 55.5 148 27.0
RcHm_v2.0_Chr2g0090931 Rosa chinensis HOM05D000007 ORTHO05D005026 6.7e-06 55.5 98 31.6
RcHm_v2.0_Chr4g0419631 Rosa chinensis HOM05D000007 ORTHO05D000521 6.7e-06 55.5 112 35.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 8.8e-06 55.1 143 28.7
HanXRQChr04g0095931 Helianthus annuus HOM05D000171 ORTHO05D009073 8.8e-06 55.1 156 28.2
PSO063G2534 Papaver somniferum HOM05D000007 ORTHO05D000676 8.8e-06 55.1 140 26.4
Rhsim03G0071300 Rhododendron simsii HOM05D000171 ORTHO05D004496 8.8e-06 55.1 181 24.9
SalBow1G1887 Salvia bowleyana HOM05D000007 ORTHO05D000521 8.8e-06 55.1 139 31.7


User provided reference genes

Program Settings