Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.9e-100 368.6 191 100.0
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 6.4e-100 367.5 191 99.5
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 3.3e-96 355.1 191 95.3
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 9.5e-96 353.6 192 96.9
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 4.7e-95 351.3 191 94.2
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 3.0e-89 332.0 191 89.0
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.1e-88 330.1 191 89.0
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 5.8e-85 317.8 189 87.3
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 2.2e-84 315.8 189 85.2
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 5.1e-81 304.7 191 81.2
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.6e-81 303.9 191 81.2
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 7.3e-80 300.8 191 80.1
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.6e-79 299.7 189 81.0
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 2.1e-79 299.3 189 79.9
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 2.1e-79 299.3 189 80.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 3.6e-79 298.5 180 83.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 4.7e-79 298.1 192 80.7
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.7e-79 298.1 191 79.1
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.4e-78 296.6 193 83.9
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 1.8e-78 296.2 195 78.5
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 8.9e-78 293.9 192 78.6
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 2.0e-77 292.7 191 78.0
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 3.4e-77 292.0 189 79.4
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 5.8e-77 291.2 191 77.5
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.7e-76 289.7 191 78.0
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.7e-76 289.7 191 78.0
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 6.4e-76 287.7 175 82.9
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 8.4e-76 287.3 182 80.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.1e-75 287.0 189 78.8
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.1e-75 287.0 187 77.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.4e-75 286.6 186 79.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 5.4e-75 284.6 185 77.8
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 5.4e-75 284.6 189 77.8
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 7.1e-75 284.3 185 78.4
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.2e-74 283.5 192 77.1
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.2e-74 283.5 190 76.8
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.7e-74 282.3 191 74.9
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.0e-73 280.4 183 78.1
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.7e-73 279.6 182 78.0
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.7e-73 279.6 189 75.1
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.9e-72 276.2 191 74.3
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.6e-72 273.9 193 75.1
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.8e-71 272.3 193 75.1
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 4.8e-71 271.6 199 70.4
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 4.8e-71 271.6 199 70.4
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 8.1e-71 270.8 193 74.6
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 8.1e-71 270.8 191 74.3
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 8.1e-71 270.8 191 73.3
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-70 270.4 202 71.3
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.1e-70 270.4 185 76.2
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.1e-70 268.9 176 77.3
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 4.0e-70 268.5 191 71.2
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 4.0e-70 268.5 158 84.2
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 4.0e-70 268.5 191 73.3
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 5.3e-70 268.1 190 73.2
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 6.9e-70 267.7 176 77.8
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.9e-70 267.7 189 74.1
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.2e-69 266.9 194 71.6
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.5e-69 266.5 201 70.6
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.5e-69 266.5 201 70.6
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.0e-69 266.2 201 70.6
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.6e-69 265.8 189 73.0
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 5.8e-69 264.6 155 83.9
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 5.8e-69 264.6 190 74.2
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-68 263.5 202 70.3
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 1.7e-68 263.1 190 71.6
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.2e-68 262.7 207 66.7
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 2.2e-68 262.7 165 79.4
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.9e-68 262.3 192 71.4
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 6.4e-68 261.2 165 80.0
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 8.4e-68 260.8 159 79.9
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-67 260.0 192 70.8
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.4e-67 259.2 192 70.3
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 4.2e-67 258.5 189 72.0
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 4.2e-67 258.5 192 70.3
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 4.2e-67 258.5 188 73.4
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 5.4e-67 258.1 190 71.1
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 9.3e-67 257.3 189 71.4
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 9.3e-67 257.3 196 68.9
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.6e-66 256.5 194 70.6
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 2.1e-66 256.1 184 70.1
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 3.5e-66 255.4 198 70.7
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 4.6e-66 255.0 175 73.1
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 4.6e-66 255.0 193 71.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 4.6e-66 255.0 195 67.7
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.0e-65 253.8 179 70.4
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.8e-65 253.1 201 66.7
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 3.0e-65 252.3 191 68.6
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.0e-65 252.3 191 69.1
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.0e-65 252.3 171 76.0
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.9e-65 251.9 192 68.8
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 6.7e-65 251.1 189 68.3
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.1e-64 250.4 190 70.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 2.5e-64 249.2 176 72.2
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 4.3e-64 248.4 182 67.6
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 4.3e-64 248.4 189 67.7
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 9.6e-64 247.3 190 67.4
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.6e-63 246.5 169 74.6
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.1e-63 246.1 194 65.5
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 2.1e-63 246.1 190 66.8
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 2.8e-63 245.7 210 65.2
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 2.8e-63 245.7 168 73.8
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 3.6e-63 245.4 149 83.9
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.4e-62 243.4 192 66.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.4e-62 243.4 199 65.3
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.4e-62 243.4 176 72.2
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.8e-62 243.0 185 69.2
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.8e-62 243.0 153 79.7
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.0e-62 241.9 187 68.4
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.5e-61 240.0 191 68.1
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.5e-61 240.0 194 66.5
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 7.6e-61 237.7 156 75.0
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 9.9e-61 237.3 192 67.7
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.2e-60 236.1 158 72.8
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.9e-60 235.7 192 67.2
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.8e-60 235.3 195 64.6
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 6.4e-60 234.6 190 67.4
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.9e-59 233.0 174 69.0
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.9e-59 233.0 168 71.4
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.1e-58 229.6 168 70.8
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 4.6e-58 228.4 167 70.1
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 6.0e-58 228.0 168 71.4
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.3e-57 226.9 258 52.3
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 3.0e-57 225.7 198 61.6
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 1.9e-56 223.0 164 73.8
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 6.2e-55 218.0 181 65.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 6.9e-54 214.5 194 60.8
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.2e-52 209.5 191 61.8
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 4.9e-52 208.4 191 61.3
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 5.7e-48 194.9 168 61.9
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.7e-47 192.2 131 74.8
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.4e-46 189.5 150 66.7
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.0e-45 186.4 147 63.9
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 3.4e-45 185.7 208 54.3
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.2e-43 179.1 110 79.1
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 4.6e-42 175.3 131 67.2
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.1e-42 174.9 184 55.4
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.9e-41 172.2 179 56.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.3e-40 168.7 104 77.9
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 3.4e-37 159.1 156 50.6
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.3e-36 157.1 144 50.7
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 2.2e-36 156.4 193 51.8
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.9e-36 156.0 130 60.0
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.5e-35 152.9 131 61.8
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 5.5e-35 151.8 154 50.6
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 7.2e-35 151.4 131 60.3
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 9.4e-35 151.0 131 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.0e-33 147.5 144 50.0
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.8e-33 146.7 131 60.3
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 5.1e-33 145.2 172 44.8
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 6.7e-33 144.8 82 82.9
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-32 144.1 91 71.4
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 6.3e-31 138.3 108 64.8
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.4e-30 137.1 134 53.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.3e-24 115.9 119 54.6
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.8e-17 93.6 87 57.5
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 4.0e-17 92.4 58 79.3
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 8.5e-12 74.7 79 60.8
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 2.7e-10 69.7 176 35.2
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.7e-10 68.9 104 45.2
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 4.1e-06 55.8 43 58.1
RcHm_v2.0_Chr2g0098501 Rosa chinensis HOM05D004525 ORTHO05D005295 7.0e-06 55.1 86 41.9


User provided reference genes

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