Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1763.8 885 100.0
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1689.5 885 96.6
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1683.3 885 96.3
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1645.6 885 93.9
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1630.5 885 93.9
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1514.6 887 87.4
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1372.8 886 79.2
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1360.1 890 79.1
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1312.4 797 83.8
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1307.4 888 75.3
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1303.5 896 75.0
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1297.0 889 74.6
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1293.9 890 75.6
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1290.0 891 74.3
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1279.2 879 74.3
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1265.0 877 72.7
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1260.0 868 74.1
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1259.6 877 72.6
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1258.4 883 73.7
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1258.0 891 73.1
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1252.7 893 72.7
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1250.3 894 72.4
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1246.1 851 75.6
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1243.8 884 71.2
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1240.7 888 72.3
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1239.2 885 71.9
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1234.9 883 71.9
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1233.8 902 70.7
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1233.0 884 71.4
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1231.9 890 72.2
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1221.1 881 72.3
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1220.7 884 71.3
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1217.6 886 69.9
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1217.6 889 70.3
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1215.3 882 71.3
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1215.3 881 72.0
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1213.4 881 71.9
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1209.1 887 69.4
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1207.2 916 69.2
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1204.1 877 70.4
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1198.0 879 70.9
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1197.6 800 76.5
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1195.6 861 71.0
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1194.9 886 68.8
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1193.3 884 69.3
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1191.4 894 69.6
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1191.4 894 69.1
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1188.3 993 65.1
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1187.2 891 69.9
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1184.1 884 70.5
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1184.1 889 69.7
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1183.3 892 67.9
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1181.4 1015 64.0
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1181.4 884 69.6
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1179.9 881 69.6
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1175.2 865 68.1
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1172.5 883 68.9
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1171.8 881 68.6
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1169.5 890 68.2
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1165.6 886 68.1
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1165.2 888 68.6
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1165.2 887 69.0
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1164.1 882 68.3
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1162.5 887 67.9
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1158.7 884 67.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1157.1 876 67.1
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1156.7 797 75.3
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1156.4 962 64.4
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1156.4 876 67.2
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1155.6 886 68.1
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1150.2 862 68.8
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1149.8 893 67.0
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1149.4 874 68.4
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1146.7 904 66.8
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1142.1 904 66.8
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1142.1 946 64.0
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1138.3 759 76.0
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1137.1 957 64.2
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1131.3 893 67.3
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1128.6 793 72.6
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1114.0 889 65.9
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 889 65.6
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 889 65.6
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1108.2 903 66.2
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1104.4 879 65.0
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 875 64.9
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 867 65.2
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 889 64.8
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1087.0 988 60.5
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 862 66.2
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1080.9 883 63.4
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 877 63.9
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.0e-311 1071.6 899 63.3
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 7.3e-311 1070.5 878 63.7
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 7.3e-311 1070.5 878 63.7
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 2.1e-310 1068.9 901 63.5
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 6.0e-310 1067.4 704 75.9
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 3.9e-309 1064.7 886 64.0
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 3.9e-309 1064.7 876 63.7
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.9e-308 1062.4 880 64.2
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 7.3e-308 1060.4 886 63.9
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.5e-305 1052.7 859 63.3
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 4.4e-305 1051.2 767 69.5
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 2.6e-289 998.8 785 65.2
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.3e-283 979.9 875 59.8
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.7e-280 969.5 749 66.8
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.1e-276 956.8 748 65.5
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.6e-273 944.1 865 59.0
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 8.4e-272 940.6 736 64.7
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.4e-271 939.9 824 60.1
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.1e-271 937.6 864 58.8
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 3.0e-269 932.2 873 57.6
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 7.2e-263 911.0 728 67.3
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 7.2e-255 884.4 676 67.2
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 7.4e-244 847.8 534 78.7
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.1e-234 817.4 884 52.9
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 3.4e-228 795.8 805 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 2.5e-223 779.6 872 50.5
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 7.0e-218 761.5 542 72.1
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.8e-205 720.3 889 47.0
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 5.2e-205 718.8 503 73.2
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 4.4e-204 715.7 892 45.7
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.3e-195 687.6 868 45.7
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 5.4e-178 629.0 489 68.3
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.4e-178 629.0 783 47.8
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.4e-170 604.4 473 66.2
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.1e-165 586.6 453 66.7
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 8.4e-163 578.6 565 57.5
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 4.2e-162 576.2 418 72.7
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.1e-161 573.9 384 75.5
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 6.5e-155 552.4 489 62.4
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.9e-154 550.8 468 60.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 2.2e-150 537.3 887 39.2
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.1e-138 498.4 770 42.6
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 7.0e-125 452.6 329 69.9
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 3.2e-122 443.7 487 52.6
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 4.2e-122 443.4 342 68.4
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.2e-121 441.8 366 65.6
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.2e-121 441.8 390 59.0
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 2.7e-116 424.1 343 65.6
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.7e-113 414.1 384 60.4
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 1.9e-98 364.8 337 58.8
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 1.6e-89 335.1 290 60.3
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 5.2e-88 330.1 249 67.5
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.4e-79 300.4 228 67.1
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.1e-64 252.7 208 61.5
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 5.8e-63 246.9 228 60.1
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 1.1e-61 242.7 185 63.2
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.9e-58 231.9 299 49.2
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 5.6e-58 230.3 159 76.1
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 3.0e-51 208.0 129 79.1
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.5e-42 179.1 157 63.1
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 2.8e-41 174.9 491 29.1
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 7.4e-34 150.2 132 61.4
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 3.4e-31 141.4 124 63.7
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.0e-30 139.8 128 62.5
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 3.8e-30 137.9 72 94.4
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 7.9e-28 130.2 115 61.7
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 4.4e-26 124.4 74 83.8
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 6.1e-20 104.0 84 67.9
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 3.0e-19 101.7 60 85.0
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.7e-14 85.9 68 66.2
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.8e-14 84.7 85 58.8
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 8.5e-14 83.6 46 89.1
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 1.8e-08 65.9 49 71.4
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 3.1e-08 65.1 79 58.2
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 5.3e-08 64.3 60 56.7
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 7.0e-08 63.9 35 77.1
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 7.0e-08 63.9 35 77.1
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 7.0e-08 63.9 35 77.1


User provided reference genes

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