Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 3496.1 1768 100.0
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 3421.3 1768 98.2
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 3407.1 1777 97.7
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 3329.3 1777 95.3
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 3293.4 1768 95.1
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 2741.5 1491 94.0
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1903.3 1789 59.8
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1866.7 1858 57.6
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1674.1 1123 80.5
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1600.1 1806 52.0
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1582.4 1703 53.0
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1541.2 1806 50.6
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1457.2 1791 49.2
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1377.8 1786 47.1
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1362.1 1778 47.2
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1350.1 1800 46.2
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1349.7 1781 46.7
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1329.3 1796 46.5
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1315.1 1765 46.2
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1286.6 1776 45.3
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1280.0 1805 45.2
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1253.4 1585 47.9
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1216.8 1807 43.3
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1213.4 1779 44.5
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1211.4 1781 44.5
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1208.7 1804 43.6
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1208.4 1758 44.5
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1192.6 1819 43.3
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 1187.2 1785 42.4
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 0.0e+00 1164.4 1808 42.1
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1147.1 634 89.9
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 1131.3 1839 41.3
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 0.0e+00 1124.4 1377 47.5
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 1120.1 1690 41.8
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1119.0 1728 41.3
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1119.0 1728 41.3
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 1099.3 1771 40.5
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1087.0 1791 40.3
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 0.0e+00 1081.2 1838 39.5
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 0.0e+00 1078.9 1827 40.8
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.4e-310 1069.7 1621 41.6
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 6.6e-308 1061.6 1761 41.3
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 1.1e-307 1060.8 1828 40.4
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 1.5e-304 1050.4 1766 39.1
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 7.0e-302 1041.6 1767 39.2
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 7.8e-301 1038.1 1810 39.8
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 6.0e-293 1011.9 1249 45.3
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 8.1e-290 1001.5 2144 35.2
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 1.2e-285 987.6 1817 37.9
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 1.0e-284 984.6 1278 44.8
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 3.1e-281 973.0 1694 39.6
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 2.9e-279 966.5 1812 38.2
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.4e-278 964.1 1248 44.0
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.4e-278 964.1 1812 37.8
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 6.2e-274 948.7 1761 38.3
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 2.9e-271 939.9 1780 37.9
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 2.8e-266 923.3 1726 37.7
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 1.5e-264 917.5 1660 38.3
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 6.4e-263 912.1 1321 42.8
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.9e-262 910.6 1800 36.6
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 9.3e-262 908.3 1896 35.1
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 9.6e-259 898.3 1782 36.3
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 5.8e-256 889.0 1269 41.8
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 9.9e-256 888.3 1794 36.0
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.3e-255 887.9 1801 35.8
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.4e-249 867.8 815 56.9
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 1.0e-247 861.7 1835 36.2
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.9e-247 859.4 432 98.1
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.3e-244 850.5 1796 36.1
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 6.5e-239 832.4 1763 36.1
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 9.3e-238 828.6 1902 34.0
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 3.9e-236 823.2 1754 35.6
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 7.4e-235 818.9 1728 35.6
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 2.8e-234 817.0 1667 36.0
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 3.7e-234 816.6 1712 36.4
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 6.3e-234 815.8 1692 35.8
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.4e-233 814.7 1653 36.7
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 6.9e-233 812.4 1773 35.4
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 9.0e-233 812.0 1747 35.6
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 9.0e-233 812.0 1768 35.0
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 2.6e-232 810.4 1761 35.4
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 6.5e-231 805.8 1662 36.0
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.1e-229 800.8 911 46.8
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 3.6e-229 800.0 1793 34.6
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.8e-228 797.7 1724 35.0
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 4.1e-225 786.6 1810 33.3
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 6.3e-218 762.7 1294 38.7
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 6.7e-212 742.7 1767 32.7
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.5e-198 698.4 771 48.4
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.9e-198 698.0 1791 32.9
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.4e-188 665.2 1812 31.8
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 2.3e-188 664.5 692 51.0
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 5.4e-185 653.3 663 52.8
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.8e-181 641.0 1876 29.9
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 3.3e-166 590.9 1407 34.3
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.5e-163 582.0 1701 30.0
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 1.5e-158 565.5 1284 31.9
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.1e-128 465.3 908 34.0
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 6.5e-106 390.6 1232 30.3
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 8.5e-98 363.6 643 36.5
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 9.4e-89 333.6 652 35.4
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 1.2e-88 333.2 608 37.3
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 2.7e-88 332.0 260 75.4
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.4e-86 324.7 854 34.4
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 1.6e-83 316.2 904 28.2
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 2.0e-78 299.3 454 35.9
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.4e-71 276.6 697 35.4
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 2.9e-69 268.9 838 27.2
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.9e-69 268.9 537 32.0
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 3.0e-66 258.8 872 28.3
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 2.6e-54 219.2 773 26.3
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 4.4e-54 218.4 667 28.6
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.7e-50 206.5 775 29.2
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 2.6e-38 166.0 429 35.4
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 7.8e-35 154.5 439 33.9
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.5e-33 149.4 131 52.7
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 2.5e-33 149.4 499 32.3
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 2.5e-25 122.9 127 48.0
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 3.2e-20 105.9 386 33.2
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 8.7e-18 97.8 587 26.4
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 3.7e-16 92.4 105 46.7
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 4.9e-13 82.0 333 28.2
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 3.5e-11 75.9 59 64.4
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 7.9e-11 74.7 324 29.6
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 5.1e-10 72.0 333 27.9
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 8.7e-10 71.2 49 57.1
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.8e-07 63.5 118 36.4


User provided reference genes

Program Settings