Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.6e-305 1050.4 542 100.0
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.2e-300 1035.8 556 96.8
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 7.2e-298 1026.5 542 98.3
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.4e-288 995.7 546 95.4
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.0e-288 994.6 546 95.4
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.8e-288 993.0 546 95.1
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.1e-285 984.6 548 94.5
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.2e-252 876.3 551 85.5
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.6e-220 769.6 543 77.7
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 4.7e-156 555.4 548 58.9
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.6e-151 540.4 543 56.9
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 5.5e-149 531.9 543 55.8
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 3.0e-147 526.2 550 55.5
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 5.2e-147 525.4 548 56.2
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 8.8e-147 524.6 546 55.9
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 2.0e-143 513.5 572 52.8
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 3.5e-143 512.7 550 52.7
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.0e-142 511.1 549 52.6
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.2e-140 504.2 548 53.8
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 2.8e-140 503.1 533 53.3
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 4.0e-139 499.2 548 53.5
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.5e-138 497.3 550 51.8
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 2.0e-138 496.9 549 51.7
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 2.6e-138 496.5 548 53.1
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 7.5e-138 495.0 568 50.4
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 7.5e-138 495.0 547 51.7
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 9.8e-138 494.6 550 52.2
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 2.9e-137 493.0 550 50.2
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 3.7e-137 492.7 551 51.4
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 1.6e-135 487.3 543 51.4
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.7e-135 486.5 546 50.9
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 4.3e-133 479.2 562 50.2
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.6e-132 477.2 547 49.5
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 6.0e-127 458.8 529 49.3
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.3e-126 457.6 580 46.9
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.9e-125 453.8 555 48.1
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 9.5e-125 451.4 552 47.5
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.2e-124 451.1 547 47.9
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.1e-123 448.0 551 47.4
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 1.8e-123 447.2 550 47.6
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.3e-123 446.8 549 47.9
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.2e-122 444.5 549 47.0
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.5e-122 444.1 551 48.6
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 9.8e-122 441.4 553 47.9
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.7e-121 440.7 552 46.7
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.7e-121 440.7 543 49.2
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.1e-120 438.0 533 49.2
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.4e-120 437.6 548 48.2
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 3.2e-120 436.4 564 46.3
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.0e-118 429.9 549 46.6
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 6.6e-118 428.7 624 43.6
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 5.6e-117 425.6 550 47.1
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.2e-116 424.5 552 44.6
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 6.2e-116 422.2 550 46.0
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.1e-115 421.4 546 44.9
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.8e-115 420.6 552 45.1
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 1.8e-115 420.6 514 48.8
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 6.8e-115 418.7 454 52.2
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.2e-114 417.9 548 46.2
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 2.9e-113 413.3 549 47.0
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 1.1e-112 411.4 549 45.2
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 4.1e-112 409.5 548 44.7
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 6.0e-111 405.6 548 44.5
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.3e-110 404.4 548 43.6
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.3e-110 404.4 551 45.7
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.7e-110 404.1 550 45.6
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 3.9e-110 402.9 548 44.3
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 8.6e-110 401.7 547 45.3
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 4.3e-109 399.4 545 45.7
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 7.3e-109 398.7 548 43.2
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 7.3e-109 398.7 548 43.2
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 7.3e-109 398.7 548 43.6
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 7.3e-109 398.7 549 44.4
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 9.6e-109 398.3 548 43.2
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 9.6e-109 398.3 543 43.8
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.2e-108 397.9 549 43.4
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.2e-108 397.9 574 44.9
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 3.6e-108 396.4 551 43.7
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 5.2e-107 392.5 550 44.5
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.2e-106 391.3 563 42.6
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 2.0e-106 390.6 547 43.0
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 2.0e-106 390.6 550 44.5
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 3.4e-106 389.8 551 43.6
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 9.9e-106 388.3 550 43.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.9e-105 386.7 554 44.8
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 4.9e-105 386.0 551 42.6
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 4.9e-105 386.0 499 46.1
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.1e-104 384.8 550 42.2
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.1e-104 384.8 547 42.0
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 4.2e-104 382.9 548 41.6
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 5.4e-104 382.5 550 43.3
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.9e-102 376.3 544 42.5
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.1e-101 374.8 546 43.0
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.5e-101 374.4 545 42.0
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 7.3e-101 372.1 545 42.4
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 9.6e-101 371.7 458 48.7
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 4.8e-100 369.4 555 41.4
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.1e-99 368.2 561 42.2
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 2.4e-99 367.1 550 42.0
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 1.2e-95 354.8 435 46.9
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 1.0e-94 351.7 547 40.2
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 5.6e-93 345.9 400 49.5
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 2.1e-92 344.0 547 42.2
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 2.4e-91 340.5 400 50.2
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 4.5e-90 336.3 527 41.2
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 5.8e-90 335.9 693 36.4
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 7.6e-90 335.5 545 39.4
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 2.7e-87 327.0 552 38.9
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 5.6e-85 319.3 571 39.1
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 8.1e-84 315.5 585 38.8
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 2.0e-82 310.8 576 37.3
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 2.7e-79 300.4 570 35.4
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 7.4e-77 292.4 349 48.4
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.4e-75 288.1 563 35.9
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.7e-71 273.9 479 39.2
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 3.6e-71 273.5 548 37.0
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 9.7e-69 265.4 407 42.8
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 6.3e-68 262.7 295 52.5
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.5e-66 258.1 354 44.4
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 4.5e-66 256.5 292 53.1
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 3.0e-62 243.8 549 35.2
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 3.1e-59 233.8 351 42.7
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 3.2e-56 223.8 277 52.3
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 3.2e-56 223.8 497 35.0
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.1e-51 208.8 230 51.7
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 2.5e-48 197.6 350 37.1
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 9.4e-48 195.7 457 32.6
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.0e-46 190.3 285 41.1
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 2.7e-39 167.5 318 37.4
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 3.6e-31 140.6 360 33.3
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 6.1e-31 139.8 157 45.2
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 6.1e-31 139.8 142 49.3
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.0e-30 139.0 157 45.9
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 4.0e-30 137.1 247 36.4
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 4.0e-30 137.1 133 51.1
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.0e-29 134.8 165 46.7
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.3e-28 132.1 152 44.7
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 3.5e-26 124.0 178 42.7
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 4.5e-26 123.6 202 40.1
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 5.6e-24 116.7 127 48.0
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 3.0e-22 110.9 502 24.7
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 2.7e-18 97.8 195 29.2
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 5.9e-18 96.7 249 31.7
RcHm_v2.0_Chr1g0346601 Rosa chinensis HOM05D004671 ORTHO05D005638 1.2e-15 89.0 62 79.0
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 6.2e-15 86.7 132 35.6
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 3.1e-14 84.3 187 31.6
RcHm_v2.0_Chr2g0108991 Rosa chinensis HOM05D004671 ORTHO05D005638 8.9e-14 82.8 62 75.8
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 9.8e-13 79.3 259 28.2
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 6.4e-12 76.6 173 32.4
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 3.0e-09 67.8 92 46.7
arahy.Tifrunner.gnm1.ann1.674JY7 Arachis hypogaea HOM05D004671 ORTHO05D038832 2.8e-07 61.2 88 43.2
arahy.Tifrunner.gnm1.ann1.X2DDWJ Arachis hypogaea HOM05D001074 ORTHO05D038832 1.8e-06 58.5 85 42.4


User provided reference genes

Program Settings