Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G5037 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.6e-55 216.9 105 100.0
FAN03G2494 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-48 195.7 104 93.3
FAN10G3663 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.3e-41 172.9 106 81.1
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 5.1e-35 151.0 104 75.0
Prupe.1G448200 Prunus persica HOM05D002813 ORTHO05D003203 1.5e-26 122.9 98 65.3
FAN17G1816 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-24 115.9 97 62.9
FAN02G4465 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.4e-24 115.5 91 62.6
FvH4_6g41671 Fragaria vesca HOM05D002813 ORTHO05D003203 5.3e-24 114.4 90 62.2
FAN27G0414 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-23 112.8 108 56.5
MD15G1093400 Malus domestica HOM05D002813 ORTHO05D003203 2.7e-23 112.1 91 62.6
RcHm_v2.0_Chr2g0157391 Rosa chinensis HOM05D002813 ORTHO05D003203 1.7e-22 109.4 93 60.2
RcHm_v2.0_Chr6g0307021 Rosa chinensis HOM05D002813 ORTHO05D003203 1.7e-22 109.4 98 58.2
FvH4_2g34990 Fragaria vesca HOM05D002813 ORTHO05D003203 2.9e-22 108.6 108 54.6
FAN15G3400 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.9e-22 108.6 108 54.6
FAN20G0435 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.9e-22 108.6 108 54.6
CiPaw.07G204200 Carya illinoinensis HOM05D002813 ORTHO05D003203 3.8e-22 108.2 98 58.2
RcHm_v2.0_Chr6g0307031 Rosa chinensis HOM05D002813 ORTHO05D003203 5.0e-22 107.8 97 52.6
FAN09G1014 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-21 106.7 98 53.1
FAN14G0433 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-21 106.3 98 53.1
FvH4_6g15310 Fragaria vesca HOM05D002813 ORTHO05D003203 1.9e-21 105.9 91 57.1
FAN03G3314 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-21 105.9 63 82.5
FAN05G0887 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-21 105.9 91 57.1
FAN06G1078 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-21 105.9 63 82.5
FAN06G3025 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.9e-21 105.9 63 82.5
FAN02G3770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.5e-21 105.5 91 57.1
CiPaw.16G053300 Carya illinoinensis HOM05D002813 ORTHO05D003203 3.2e-21 105.1 102 55.9
FvH4_7g20381 Fragaria vesca HOM05D002813 ORTHO05D003203 1.6e-20 102.8 60 83.3
QL12p041358 Quercus lobata HOM05D002813 ORTHO05D003203 2.7e-20 102.1 95 54.7
FvH4_2g32530 Fragaria vesca HOM05D002813 ORTHO05D003203 3.6e-20 101.7 92 60.9
FAN24G2117 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.6e-20 101.7 92 60.9
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 3.6e-20 101.7 97 55.7
FvH4_2g34980 Fragaria vesca HOM05D002813 ORTHO05D003203 4.7e-20 101.3 98 51.0
Duzib168G2404 Durio zibethinus HOM05D002813 ORTHO05D003203 6.1e-20 100.9 99 50.5
FAN15G1653 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.1e-20 100.9 98 51.0
FAN27G2509 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.1e-20 100.9 98 51.0
FAN27G1770 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.8e-19 99.4 92 56.5
Thecc.09G045300 Theobroma cacao HOM05D002813 ORTHO05D003203 1.8e-19 99.4 99 49.5
FAN10G2587 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-19 99.0 92 59.8
FAN10G3741 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.3e-19 99.0 92 59.8
FAN01G0062 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.0e-19 98.6 92 58.7
FAN20G2873 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.0e-19 98.6 98 51.0
Gorai.009G049800 Gossypium raimondii HOM05D002813 ORTHO05D003203 4.0e-19 98.2 99 52.5
Gohir.D05G048500 Gossypium hirsutum HOM05D002813 ORTHO05D003203 5.2e-19 97.8 99 51.5
RcHm_v2.0_Chr6g0306251 Rosa chinensis HOM05D002813 ORTHO05D003203 1.2e-18 96.7 89 49.4
FAN15G0916 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-18 96.3 101 50.5
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 2.0e-18 95.9 99 49.5
FvH4_2g32540 Fragaria vesca HOM05D002813 ORTHO05D003203 2.0e-18 95.9 92 54.3
FAN24G1750 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-18 95.9 92 54.3
FAN27G1144 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-18 95.9 101 49.5
Eucgr.C02935 Eucalyptus grandis HOM05D002813 ORTHO05D003203 2.6e-18 95.5 98 51.0
FvH4_2g32520 Fragaria vesca HOM05D002813 ORTHO05D003203 2.6e-18 95.5 92 54.3
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.6e-18 95.5 96 51.0
Potri.006G238300 Populus trichocarpa HOM05D002813 ORTHO05D003203 2.6e-18 95.5 91 51.6
FAN06G4596 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.4e-18 95.1 98 55.1
Gohir.A05G046700 Gossypium hirsutum HOM05D002813 ORTHO05D003203 4.4e-18 94.7 99 49.5
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 5.7e-18 94.4 96 52.1
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.7e-18 94.4 96 52.1
FAN28G0350 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.7e-18 94.4 92 53.3
FvH4_2g32610 Fragaria vesca HOM05D002813 ORTHO05D003203 1.3e-17 93.2 93 54.8
TAR626G1934 Trochodendron aralioides HOM05D002813 ORTHO05D003203 1.3e-17 93.2 94 48.9
Atru.chr7.2088 Acer truncatum HOM05D002813 ORTHO05D003203 1.7e-17 92.8 91 50.5
FAN24G2983 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-17 92.8 93 54.8
FAN20G1781 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.2e-17 92.4 89 53.9
FvH4_2g35000 Fragaria vesca HOM05D002813 ORTHO05D003203 4.8e-17 91.3 98 49.0
RcHm_v2.0_Chr6g0307011 Rosa chinensis HOM05D002813 ORTHO05D003203 4.8e-17 91.3 77 62.3
QL12p041353 Quercus lobata HOM05D002813 ORTHO05D003203 6.3e-17 90.9 96 49.0
GSVIVG01035624001 Vitis vinifera HOM05D002813 ORTHO05D003203 6.3e-17 90.9 88 52.3
FvH4_2g35530 Fragaria vesca HOM05D002813 ORTHO05D003203 1.1e-16 90.1 93 48.4
FAN27G3388 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-16 90.1 93 48.4
ATR0705G192 Amborella trichopoda HOM05D002813 ORTHO05D003203 1.4e-16 89.7 81 54.3
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.4e-16 89.7 91 50.5
Ciclev10010367m.g Citrus clementina HOM05D002813 ORTHO05D003203 2.4e-16 89.0 97 47.4
FvH4_2g32630 Fragaria vesca HOM05D002813 ORTHO05D003203 2.4e-16 89.0 92 52.2
Manes.16G075500 Manihot esculenta HOM05D002813 ORTHO05D003203 3.1e-16 88.6 91 52.7
FAN15G1989 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.1e-16 88.2 71 60.6
FvH4_1g05120 Fragaria vesca HOM05D002813 ORTHO05D003203 7.0e-16 87.4 92 51.1
FAN17G0649 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.0e-16 87.4 101 49.5
FAN18G3569 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.0e-16 87.4 90 56.7
FAN19G0454 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.0e-16 87.4 92 51.1
FAN18G3812 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.1e-16 87.0 83 57.8
Nn2g11622 Nelumbo nucifera HOM05D002813 ORTHO05D003203 9.1e-16 87.0 88 50.0
FvH4_6g07350 Fragaria vesca HOM05D002813 ORTHO05D003203 2.0e-15 85.9 80 50.0
FAN27G2375 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-15 85.9 87 51.7
FvH4_5g19260 Fragaria vesca HOM05D002813 ORTHO05D003203 2.7e-15 85.5 88 50.0
FAN18G2037 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.7e-15 85.5 88 50.0
Cc08_g09560 Coffea canephora HOM05D002813 ORTHO05D003203 3.5e-15 85.1 86 47.7
FAN09G1972 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.9e-15 84.3 80 50.0
FAN06G1567 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.7e-15 84.0 91 51.6
SEGI_38686 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 7.7e-15 84.0 88 48.9
Peaxi162Scf00227g00722 Petunia axillaris HOM05D002813 ORTHO05D003203 1.3e-14 83.2 88 50.0
Nitab4.5_0028416g0010 Nicotiana tabacum HOM05D002813 ORTHO05D003203 2.2e-14 82.4 68 54.4
FvH4_5g12210 Fragaria vesca HOM05D002813 ORTHO05D003203 5.0e-14 81.3 104 48.1
FAN18G4406 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.0e-14 81.3 98 48.0
FAN05G2846 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.5e-14 80.9 63 55.6
SGA_v2.0_scaffold103G30003 Striga asiatica HOM05D002813 ORTHO05D003203 6.5e-14 80.9 70 51.4
FAN26G1940 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-13 80.1 94 42.6
FAN20G2689 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-13 79.7 81 53.1
Solyc08g066630.2 Solanum lycopersicum HOM05D002813 ORTHO05D003203 1.5e-13 79.7 70 52.9
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 1.5e-13 79.7 70 52.9
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 1.9e-13 79.3 68 54.4
FAN04G1781 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.5e-13 79.0 92 50.0
RcHm_v2.0_Chr5g0073471 Rosa chinensis HOM05D002813 ORTHO05D003203 2.5e-13 79.0 95 48.4
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 2.5e-13 79.0 88 44.3
FAN04G1334 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.2e-13 78.6 98 48.0
RcHm_v2.0_Chr6g0306231 Rosa chinensis HOM05D002813 ORTHO05D003203 4.2e-13 78.2 94 47.9
FAN14G4978 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.2e-13 77.4 80 47.5
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 7.2e-13 77.4 88 44.3
FAN04G1304 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.5e-13 77.0 71 52.1
FAN18G0957 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.5e-13 77.0 97 47.4
FvH4_5g12200 Fragaria vesca HOM05D002813 ORTHO05D003203 1.2e-12 76.6 97 46.4
FvH4_6g06400 Fragaria vesca HOM05D002813 ORTHO05D003203 2.1e-12 75.9 80 47.5
FAN14G1246 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.1e-12 75.9 88 42.0
FAN14G2467 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.7e-12 75.5 86 43.0
RcHm_v2.0_Chr7g0185401 Rosa chinensis HOM05D002813 ORTHO05D003203 2.7e-12 75.5 86 45.3
FvH4_6g11570 Fragaria vesca HOM05D002813 ORTHO05D003203 3.6e-12 75.1 86 43.0
FAN05G4830 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.0e-12 73.9 86 41.9
FvH4_5g12160 Fragaria vesca HOM05D002813 ORTHO05D003203 2.3e-11 72.4 89 41.6
FvH4_3g21760 Fragaria vesca HOM05D002813 ORTHO05D003203 3.0e-11 72.0 70 51.4
FAN04G2105 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.0e-11 72.0 89 41.6
FAN08G1174 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.0e-11 72.0 89 41.6
FAN25G1955 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.0e-11 71.6 93 46.2
FAN25G3603 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.0e-11 71.6 90 43.3
MSTRG.9106 Avicennia marina HOM05D002813 ORTHO05D003203 5.2e-11 71.2 93 41.9
FAN04G3192 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.2e-11 71.2 106 44.3
FAN13G2791 Fragaria x ananassa HOM05D002813 ORTHO05D003203 5.2e-11 71.2 90 40.0
FAN11G0908 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.8e-11 70.5 94 45.7
FvH4_5g12180 Fragaria vesca HOM05D002813 ORTHO05D003203 1.2e-10 70.1 104 42.3
FvH4_3g40700 Fragaria vesca HOM05D002813 ORTHO05D003203 1.5e-10 69.7 94 45.7
FAN11G2625 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-10 69.7 111 41.4
FAN16G0815 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-10 69.7 94 44.7
FAN18G2625 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-10 69.7 88 45.5
FAN18G2715 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.5e-10 69.7 88 45.5
FAN18G0945 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.6e-10 68.9 63 49.2
FAN21G0510 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.4e-10 68.6 106 42.5
Mapoly0100s0050 Marchantia polymorpha HOM05D002813 ORTHO05D003203 9.8e-10 67.0 88 38.6
FvH4_2g37241 Fragaria vesca HOM05D002813 ORTHO05D003203 1.7e-09 66.2 110 40.0
FAN27G1742 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.8e-09 65.5 110 40.0
FAN15G2356 Fragaria x ananassa HOM05D002813 ORTHO05D000003 3.7e-09 65.1 110 40.0
FAN18G4233 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.3e-09 64.3 104 39.4
FAN20G1057 Fragaria x ananassa HOM05D002813 ORTHO05D000003 6.3e-09 64.3 99 40.4
FAN16G2005 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.1e-08 63.5 70 48.6
SEGI_37199 Sequoiadendron giganteum HOM05D002813 ORTHO05D003203 2.4e-08 62.4 88 38.6
FvH4_3g11250 Fragaria vesca HOM05D002813 ORTHO05D003203 3.1e-08 62.0 106 40.6
FAN14G4337 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.0e-08 60.8 80 40.0
FAN25G3196 Fragaria x ananassa HOM05D002813 ORTHO05D003203 9.2e-08 60.5 105 40.0
FAN08G0212 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-07 59.7 64 54.7
FAN13G3008 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.0e-07 59.3 64 54.7
FAN04G1018 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.7e-07 58.9 64 53.1
FAN06G0128 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.5e-07 58.5 104 39.4
FvH4_7g29850 Fragaria vesca HOM05D002813 ORTHO05D003203 7.7e-07 57.4 104 39.4
FAN06G0370 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.7e-07 57.4 104 39.4
FAN11G3977 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-06 57.0 60 48.3
FAN25G2464 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-06 57.0 97 41.2
FAN27G3291 Fragaria x ananassa HOM05D007761 ORTHO05D003203 1.3e-06 56.6 88 40.9
FvH4_6g10172 Fragaria vesca HOM05D002813 ORTHO05D003203 1.7e-06 56.2 59 47.5
Cpa.g.sc5.256 Carica papaya HOM05D002125 ORTHO05D002105 2.3e-06 55.8 93 34.4
FAN03G2769 Fragaria x ananassa HOM05D002378 ORTHO05D002936 2.3e-06 55.8 100 37.0
FAN15G1644 Fragaria x ananassa HOM05D002378 ORTHO05D002936 2.3e-06 55.8 100 37.0
FAN21G3192 Fragaria x ananassa HOM05D002378 ORTHO05D002936 2.3e-06 55.8 100 37.0
FAN24G2051 Fragaria x ananassa HOM05D002378 ORTHO05D002936 2.3e-06 55.8 100 37.0
PGR004G0027 Punica granatum HOM05D002125 ORTHO05D002105 2.3e-06 55.8 96 32.3
CSS0015901 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 5.0e-06 54.7 96 32.3
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 5.0e-06 54.7 96 32.3
Hma1.2p1_0501F.1_g167260 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 5.0e-06 54.7 95 32.6
Hma1.2p1_2488F.1_g323150 Hydrangea macrophylla HOM05D002125 ORTHO05D002105 5.0e-06 54.7 95 32.6
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 6.6e-06 54.3 94 33.0
FAN06G1222 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.6e-06 53.9 57 50.9
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.6e-06 53.9 97 39.2
vmacro08918 Vaccinium macrocarpon HOM05D002125 ORTHO05D002105 8.6e-06 53.9 104 30.8


User provided reference genes

Program Settings