Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 2353.6 1251 100.0
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 2330.4 1251 99.2
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 2320.8 1258 98.6
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 2163.3 1292 90.6
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 2134.8 1294 90.0
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 2057.3 1262 88.0
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1569.3 1269 68.2
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1455.7 1180 69.5
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1302.3 1351 56.8
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1253.0 1245 59.0
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1224.9 1139 59.2
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1214.5 1275 54.6
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1204.1 1295 54.3
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1191.8 1280 53.4
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1188.3 1266 54.4
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1187.6 1318 52.5
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1186.8 1306 53.6
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1177.5 1269 53.5
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1170.6 1291 54.7
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1167.1 1283 53.9
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1161.7 1187 55.5
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1157.5 1103 58.5
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1153.3 1303 52.3
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1152.5 1283 54.3
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1149.8 1276 53.1
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1148.7 1178 55.3
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1142.5 1294 52.9
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1138.3 1318 52.2
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1137.9 974 62.6
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1137.1 1275 52.6
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1132.1 1265 54.5
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1131.7 1323 52.8
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1129.8 1300 52.1
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1126.3 1266 52.9
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 0.0e+00 1124.8 1127 57.4
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1124.0 1305 52.8
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1122.8 1264 52.3
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1118.2 1284 51.5
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1117.8 1308 51.2
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1117.4 1150 55.8
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1115.1 1274 53.9
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1097.0 1277 51.8
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1080.9 1296 50.7
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 8.6e-312 1073.9 1272 50.9
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 2.2e-310 1069.3 1274 52.4
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.3e-307 1060.1 1295 50.0
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.9e-306 1056.2 1357 48.2
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 6.3e-305 1051.2 1296 49.3
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.8e-304 1049.7 1425 48.5
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 1.8e-304 1049.7 1461 45.4
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 7.9e-300 1034.2 1179 52.0
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.4e-299 1033.5 1310 48.9
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.3e-299 1032.7 1362 47.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.1e-298 1030.4 1101 53.0
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 1.1e-296 1023.8 1264 48.5
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 3.1e-296 1022.3 1181 50.4
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 9.1e-296 1020.8 1187 52.3
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 5.0e-294 1015.0 1285 49.5
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 5.5e-293 1011.5 1297 47.0
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 4.7e-292 1008.4 1152 51.0
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 6.1e-292 1008.1 1269 48.0
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.4e-291 1006.9 1253 49.4
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 6.7e-291 1004.6 1334 46.2
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 4.4e-290 1001.9 1267 48.3
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.1e-288 997.3 1348 47.4
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 3.5e-287 992.3 1270 48.4
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 5.9e-287 991.5 1269 47.8
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 2.9e-286 989.2 1162 49.7
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 3.8e-286 988.8 1078 52.7
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.9e-285 986.5 1267 48.1
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 7.2e-285 984.6 1020 56.0
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 9.4e-285 984.2 1271 48.2
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 4.7e-284 981.9 957 56.5
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 2.3e-283 979.5 1317 45.7
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 4.0e-283 978.8 1297 47.4
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 4.4e-282 975.3 1271 47.8
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 4.4e-282 975.3 1271 47.8
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.3e-281 973.8 1274 47.7
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.7e-281 973.4 1306 46.9
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 2.8e-281 972.6 1271 47.7
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 3.7e-281 972.2 1272 47.8
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 5.9e-279 964.9 979 56.4
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.5e-277 960.3 1301 45.1
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 6.8e-275 951.4 953 56.2
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 1.5e-274 950.3 1299 47.4
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.4e-272 943.7 1125 49.2
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.5e-269 933.7 1180 51.4
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 2.3e-267 926.4 1169 49.3
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.1e-264 917.5 1331 43.7
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 2.9e-262 909.4 1154 49.0
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.1e-256 891.0 1141 47.2
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.2e-244 850.9 1329 42.4
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.7e-241 840.5 1283 42.9
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 9.2e-240 834.7 1328 42.3
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 4.7e-236 822.4 1349 41.2
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 8.1e-236 821.6 1274 41.8
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 3.8e-233 812.8 1162 44.3
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 1.4e-216 757.7 1187 41.0
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 3.0e-214 750.0 1073 45.4
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.8e-206 724.2 975 44.9
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 8.2e-204 715.3 554 66.4
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 8.7e-198 695.3 517 69.4
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 5.7e-197 692.6 954 45.7
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 5.0e-193 679.5 1279 38.5
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.1e-181 641.7 527 63.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 4.0e-166 590.1 991 38.7
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.4e-155 555.1 1175 34.0
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 6.1e-143 513.1 1011 34.4
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 8.3e-132 476.1 687 42.1
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.4e-115 420.2 251 88.0
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.1e-102 377.9 534 43.4
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.0e-101 375.2 955 29.7
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.3e-81 309.3 280 60.0
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 9.7e-80 303.1 178 87.6
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.3e-56 224.9 172 65.7
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 6.3e-47 194.1 132 73.5
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 4.1e-46 191.4 236 44.1
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 2.2e-39 169.1 577 28.6
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.9e-28 132.1 124 57.3
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.2e-26 126.7 105 58.1
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.1e-25 122.1 97 66.0
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 1.2e-24 120.2 242 33.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 3.4e-24 118.6 138 49.3
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 3.4e-24 118.6 78 67.9
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.6e-21 108.2 105 56.2
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 6.6e-20 104.4 150 45.3
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.6e-20 104.0 120 53.3
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.6e-19 101.3 125 52.0
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 2.8e-18 99.0 106 51.9
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 1.1e-17 97.1 71 64.8
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.4e-17 96.7 89 55.1
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.2e-15 89.4 438 27.2
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 1.7e-12 79.7 197 30.5
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.4e-09 70.1 94 41.5
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 9.9e-08 63.9 65 50.8
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 1.3e-07 63.5 90 44.4
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 1.1e-06 60.5 40 77.5
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.2e-06 58.9 39 66.7
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 7.1e-06 57.8 48 56.2
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 7.1e-06 57.8 81 37.0


User provided reference genes

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