Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4964 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-127 459.9 218 100.0
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 7.0e-119 430.6 210 97.1
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.3e-114 415.6 220 91.8
FAN19G3137 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.7e-96 355.1 198 86.9
FAN27G1530 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.8e-66 256.5 159 77.4
FvH4_5g31990 Fragaria vesca HOM05D006849 ORTHO05D003348 1.1e-55 220.7 105 92.4
FAN21G2341 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-53 214.2 166 65.1
FAN16G1806 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.1e-51 206.5 213 49.8
FAN23G2888 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.2e-51 204.9 209 50.2
FvH4_5g19920 Fragaria vesca HOM05D006849 ORTHO05D003348 1.4e-50 203.8 213 49.3
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 1.6e-46 190.3 207 47.8
FAN15G3621 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.5e-46 189.1 186 51.1
FAN03G1780 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.8e-45 186.8 107 85.0
RcHm_v2.0_Chr3g0491361 Rosa chinensis HOM05D006849 ORTHO05D003348 5.1e-45 185.3 214 44.4
RcHm_v2.0_Chr7g0206181 Rosa chinensis HOM05D006849 ORTHO05D003348 2.0e-41 173.3 208 42.8
FAN25G2444 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.9e-40 169.5 98 83.7
FAN18G1198 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.5e-40 167.9 75 94.7
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 7.2e-39 164.9 213 38.5
RcHm_v2.0_Chr2g0133251 Rosa chinensis HOM05D006849 ORTHO05D003348 2.1e-38 163.3 179 48.0
RcHm_v2.0_Chr2g0149141 Rosa chinensis HOM05D006849 ORTHO05D003348 3.6e-38 162.5 204 41.2
FvH4_3g14392 Fragaria vesca HOM05D000004 ORTHO05D000002 4.6e-38 162.2 93 86.0
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 4.6e-38 162.2 202 41.6
RcHm_v2.0_Chr1g0379271 Rosa chinensis HOM05D006849 ORTHO05D003348 1.0e-37 161.0 171 47.4
FAN16G3151 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.5e-36 157.1 93 78.5
FAN15G0345 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.9e-36 156.8 107 75.7
FAN27G2674 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.8e-35 152.9 210 42.4
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.5e-32 141.4 207 38.6
RcHm_v2.0_Chr2g0135141 Rosa chinensis HOM05D006849 ORTHO05D003348 1.9e-31 140.2 108 54.6
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 8.8e-29 131.3 197 37.6
RcHm_v2.0_Chr2g0174211 Rosa chinensis HOM05D006849 ORTHO05D003348 5.7e-28 128.6 132 47.0
FAN10G4353 Fragaria x ananassa HOM05D006849 ORTHO05D003348 7.4e-28 128.3 207 38.6
FvH4_4g22470 Fragaria vesca HOM05D006849 ORTHO05D003348 3.7e-27 125.9 167 38.9
RcHm_v2.0_Chr5g0004901 Rosa chinensis HOM05D006849 ORTHO05D003348 1.1e-26 124.4 108 50.0
FAN08G0186 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.9e-26 121.7 188 37.8
FAN26G0218 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-24 117.9 192 37.5
MD17G1262000 Malus domestica HOM05D006849 ORTHO05D003348 1.0e-24 117.9 145 38.6
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.2e-23 112.8 109 43.1
FAN04G0160 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.2e-23 112.5 115 51.3
FAN06G3145 Fragaria x ananassa HOM05D013178 ORTHO05D019138 9.4e-23 111.3 110 52.7
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 4.7e-22 109.0 216 31.5
MD08G1229500 Malus domestica HOM05D006849 ORTHO05D003348 1.0e-21 107.8 133 39.1
FAN21G0813 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.4e-21 107.5 162 38.3
FAN20G3125 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.3e-21 106.7 182 34.1
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.9e-21 105.9 216 31.5
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 8.8e-21 104.8 176 32.4
FAN12G0440 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.0e-20 103.6 138 42.0
FAN03G2782 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.6e-20 103.2 52 92.3
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 2.2e-19 100.1 217 28.6
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.8e-19 99.8 217 28.1
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 2.8e-19 99.8 107 43.0
FAN07G1000 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.7e-19 99.4 204 34.3
FvH4_2g22171 Fragaria vesca HOM05D006849 ORTHO05D003348 4.8e-19 99.0 212 33.5
FAN26G2996 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.1e-18 95.9 176 34.1
MD04G1002000 Malus domestica HOM05D029265 ORTHO05D003348 9.1e-18 94.7 189 28.6
FAN28G1495 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.2e-16 90.1 200 28.5
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.2e-16 90.1 178 30.9
FAN09G4859 Fragaria x ananassa HOM05D007856 ORTHO05D003348 5.0e-16 89.0 163 30.7
FAN10G1627 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.1e-15 87.8 71 63.4
FAN05G3326 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.5e-15 87.4 211 28.9
FAN23G1437 Fragaria x ananassa HOM05D000005 ORTHO05D003348 1.9e-15 87.0 209 26.8
FvH4_1g07041 Fragaria vesca HOM05D007856 ORTHO05D003348 2.5e-15 86.7 209 26.3
FAN15G2956 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.2e-15 86.3 86 50.0
FAN16G1224 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.2e-15 86.3 86 50.0
FAN16G3375 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.2e-15 86.3 86 50.0
FvH4_2g06412 Fragaria vesca HOM05D006849 ORTHO05D003348 4.2e-15 85.9 113 41.6
FAN21G3588 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.5e-15 85.5 119 39.5
MD14G1125700 Malus domestica HOM05D006849 ORTHO05D003348 5.5e-15 85.5 93 41.9
TWI09G1314 Tripterygium wilfordii HOM05D002907 ORTHO05D003348 1.6e-14 84.0 137 34.3
FvH4_5g29621 Fragaria vesca HOM05D006849 ORTHO05D003348 4.7e-14 82.4 80 41.2
FvH4_6g30401 Fragaria vesca HOM05D006849 ORTHO05D003348 8.0e-14 81.6 129 35.7
FAN20G1145 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.0e-14 81.6 106 41.5
RcHm_v2.0_Chr1g0378751 Rosa chinensis HOM05D006849 ORTHO05D003348 1.4e-13 80.9 91 49.5
FAN21G2011 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.0e-13 79.7 105 40.0
FAN05G0189 Fragaria x ananassa HOM05D007856 ORTHO05D003348 5.2e-13 79.0 89 42.7
FAN11G1356 Fragaria x ananassa HOM05D007856 ORTHO05D003348 6.7e-13 78.6 113 37.2
RcHm_v2.0_Chr5g0028311 Rosa chinensis HOM05D006849 ORTHO05D003348 8.8e-13 78.2 88 44.3
MD07G1020000 Malus domestica HOM05D006849 ORTHO05D003348 2.0e-12 77.0 96 38.5
FAN24G2869 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.6e-12 76.6 206 28.2
BraA05t20759Z Brassica rapa HOM05D000305 ORTHO05D000065 3.3e-12 76.3 200 26.0
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 3.3e-12 76.3 109 37.6
Thecc.04G012000 Theobroma cacao HOM05D000096 ORTHO05D000045 3.3e-12 76.3 144 35.4
Thecc.03G185000 Theobroma cacao HOM05D007876 ORTHO05D000065 4.4e-12 75.9 144 35.4
BraA02t05129Z Brassica rapa HOM05D000305 ORTHO05D000065 5.7e-12 75.5 162 27.2
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 5.7e-12 75.5 148 32.4
Thecc.09G096600 Theobroma cacao HOM05D000096 ORTHO05D000045 5.7e-12 75.5 144 34.7
FAN16G1061 Fragaria x ananassa HOM05D006849 ORTHO05D003348 7.5e-12 75.1 95 42.1
FAN23G1018 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.7e-11 73.9 103 39.8
HanXRQChr05g0159821 Helianthus annuus HOM05D011053 ORTHO05D010547 1.7e-11 73.9 134 30.6
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.8e-11 73.2 119 37.0
FAN12G1343 Fragaria x ananassa HOM05D007856 ORTHO05D003348 3.7e-11 72.8 215 25.1
Thecc.04G155200 Theobroma cacao HOM05D000096 ORTHO05D000045 3.7e-11 72.8 144 34.7
FAN09G2827 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.4e-10 70.9 106 39.6
FAN21G0042 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.4e-10 70.9 155 27.1
FAN27G2295 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.4e-10 70.9 102 40.2
FvH4_3g07130 Fragaria vesca HOM05D006849 ORTHO05D003348 3.1e-10 69.7 101 38.6
FvH4_3g24350 Fragaria vesca HOM05D006849 ORTHO05D003348 3.1e-10 69.7 102 38.2
FAN26G2619 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.1e-10 69.7 88 42.0
FAN20G2082 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.1e-10 69.3 114 37.7
FAN20G3088 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.1e-10 69.3 205 26.8
FAN21G3637 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.1e-10 69.3 152 30.3
FAN27G1954 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.1e-10 69.3 40 87.5
HanXRQChr11g0327291 Helianthus annuus HOM05D011053 ORTHO05D010547 4.1e-10 69.3 190 26.8
TWI38G1001 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.1e-10 69.3 142 33.1
FvH4_6g33630 Fragaria vesca HOM05D006849 ORTHO05D003348 7.0e-10 68.6 101 38.6
FAN14G5332 Fragaria x ananassa HOM05D006849 ORTHO05D003348 7.0e-10 68.6 101 38.6
ECA238G0409 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.2e-09 67.8 178 28.7
QL03p038017 Quercus lobata HOM05D000313 ORTHO05D000065 1.2e-09 67.8 149 28.9
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.6e-09 67.4 117 29.1
FAN26G2754 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.6e-09 67.4 45 71.1
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 2.0e-09 67.0 138 28.3
FAN01G0657 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.7e-09 66.6 134 29.1
FAN08G3609 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.5e-09 65.9 101 37.6
MD10G1198900 Malus domestica HOM05D006849 ORTHO05D003348 7.7e-09 65.1 77 39.0
MD05G1167800 Malus domestica HOM05D006849 ORTHO05D003348 1.0e-08 64.7 94 37.2
TWI53G0769 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.0e-08 64.7 114 28.1
HanXRQChr04g0115711 Helianthus annuus HOM05D011053 ORTHO05D010547 1.3e-08 64.3 104 34.6
RcHm_v2.0_Chr7g0230621 Rosa chinensis HOM05D006849 ORTHO05D003348 1.7e-08 63.9 66 47.0
QL03p025410 Quercus lobata HOM05D000005 ORTHO05D000065 2.2e-08 63.5 145 28.3
QL04p076347 Quercus lobata HOM05D002907 ORTHO05D000065 2.2e-08 63.5 163 28.8
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 2.2e-08 63.5 163 28.8
Carub.0004s2878 Capsella rubella HOM05D000305 ORTHO05D000065 6.5e-08 62.0 192 26.6
FAN24G2379 Fragaria x ananassa HOM05D007856 ORTHO05D003348 6.5e-08 62.0 144 28.5
QL93p0160_0016 Quercus lobata HOM05D002907 ORTHO05D000065 6.5e-08 62.0 163 28.2
RcHm_v2.0_Chr5g0067561 Rosa chinensis HOM05D006849 ORTHO05D003348 6.5e-08 62.0 66 45.5
Medtr4g070090 Medicago truncatula HOM05D002907 ORTHO05D000065 8.5e-08 61.6 161 25.5
Medtr5g027390 Medicago truncatula HOM05D002907 ORTHO05D000065 8.5e-08 61.6 161 25.5
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 1.1e-07 61.2 160 30.0
HanXRQChr07g0197521 Helianthus annuus HOM05D011053 ORTHO05D010547 1.9e-07 60.5 154 29.2
TWI63G1232 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.5e-07 60.1 146 25.3
SGA_v2.0_scaffold59G20735 Striga asiatica HOM05D010852 ORTHO05D002376 3.2e-07 59.7 121 28.1
FAN20G0190 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.2e-07 59.3 174 25.9
BcaC01g00622 Brassica carinata HOM05D000305 ORTHO05D000065 5.5e-07 58.9 149 27.5
MD05G1215800 Malus domestica HOM05D006849 ORTHO05D003348 5.5e-07 58.9 112 33.9
MD02G1249900 Malus domestica HOM05D006849 ORTHO05D003348 7.2e-07 58.5 78 41.0
Medtr8g039210 Medicago truncatula HOM05D000096 ORTHO05D000045 1.6e-06 57.4 162 26.5
HanXRQChr02g0058501 Helianthus annuus HOM05D011053 ORTHO05D010547 2.1e-06 57.0 181 26.0
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 2.1e-06 57.0 160 28.1
FAN11G4028 Fragaria x ananassa HOM05D000379 ORTHO05D000254 2.7e-06 56.6 133 28.6
HanXRQChr06g0179651 Helianthus annuus HOM05D003964 ORTHO05D000174 6.1e-06 55.5 121 28.1


User provided reference genes

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