Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.6e-269 930.6 470 100.0
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.8e-265 918.7 470 98.5
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.4e-259 896.7 470 95.7
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.7e-259 896.3 470 96.2
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.8e-258 894.0 471 96.2
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 8.0e-245 850.1 468 89.7
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 3.1e-212 741.9 474 78.3
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 8.6e-207 723.8 477 75.1
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.1e-204 716.8 476 75.4
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 6.6e-191 671.0 474 70.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.8e-189 665.6 460 70.7
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.2e-187 660.2 471 67.9
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.3e-186 656.8 460 72.2
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.1e-185 653.7 451 71.0
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.1e-185 653.7 459 69.3
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.9e-185 652.9 471 67.9
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 7.8e-184 647.5 460 70.9
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.3e-183 646.0 460 68.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.5e-182 642.5 459 68.2
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.5e-182 642.5 459 68.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.3e-182 642.1 459 68.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 7.3e-182 641.0 470 67.0
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.6e-181 639.8 471 67.1
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.1e-181 639.4 473 67.2
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 2.8e-181 639.0 444 69.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.2e-181 637.9 471 67.5
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 6.9e-180 634.4 459 68.2
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.9e-180 634.4 462 68.0
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 9.0e-180 634.0 471 66.0
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.4e-179 632.1 459 67.5
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.4e-179 632.1 451 66.3
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 4.5e-179 631.7 462 67.1
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 2.9e-178 629.0 471 65.8
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.4e-177 626.7 467 66.6
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.9e-177 626.3 467 66.4
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-176 623.6 467 66.2
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.2e-176 623.6 455 66.2
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.6e-176 623.2 471 64.8
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.0e-175 620.5 437 68.2
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 3.0e-175 619.0 471 65.4
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.7e-175 617.5 454 67.2
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.5e-174 616.7 454 67.0
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 7.4e-174 614.4 473 63.8
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.7e-173 612.1 454 66.5
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.8e-172 609.8 460 65.9
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 6.9e-172 607.8 458 67.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.6e-171 605.9 470 64.0
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.2e-170 602.8 467 63.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.5e-169 599.4 455 66.8
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.2e-169 598.6 461 65.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 2.7e-168 595.9 457 64.1
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.0e-167 594.0 477 62.3
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 6.7e-167 591.3 466 62.9
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 3.3e-166 589.0 478 63.2
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.8e-165 585.9 454 64.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.4e-164 583.6 474 62.0
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 5.3e-164 581.6 456 64.3
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 5.3e-164 581.6 466 62.7
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 4.5e-163 578.6 460 61.1
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 2.2e-162 576.2 461 62.0
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 4.9e-162 575.1 471 60.7
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.1e-161 573.9 459 62.5
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 3.2e-161 572.4 471 62.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 3.1e-156 555.8 459 60.3
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.5e-154 547.7 477 58.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.2e-152 543.9 475 58.3
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.1e-152 541.6 471 58.8
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.4e-151 540.4 463 60.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.1e-151 538.5 456 60.5
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 9.7e-150 534.3 458 58.7
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 2.2e-149 533.1 458 57.2
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.8e-149 532.7 477 57.7
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.1e-148 530.8 478 57.3
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.2e-147 527.3 471 56.5
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 2.0e-147 526.6 467 55.2
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.0e-147 526.6 459 57.3
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 7.7e-147 524.6 458 56.6
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 7.7e-147 524.6 468 59.0
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 1.3e-146 523.9 456 55.7
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 3.8e-146 522.3 444 57.2
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.9e-145 520.0 466 55.8
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.6e-144 516.9 451 56.1
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.3e-142 509.2 457 54.5
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.4e-142 508.8 458 55.0
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 9.7e-142 507.7 456 54.4
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 2.8e-141 506.1 396 61.4
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-140 503.8 422 59.2
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.1e-140 502.3 458 54.4
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.3e-140 501.9 458 54.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 7.0e-140 501.5 458 55.5
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.5e-139 500.4 458 55.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.3e-138 497.3 413 60.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.7e-138 496.9 442 55.0
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.7e-138 496.9 463 54.6
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.7e-138 496.9 454 56.8
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-138 495.7 460 55.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-137 494.2 460 54.8
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.4e-137 493.8 462 54.8
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-137 492.7 461 54.9
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.5e-137 491.9 459 53.4
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.7e-136 489.6 460 54.6
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-135 487.3 460 54.6
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.2e-135 485.3 451 54.3
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 6.7e-135 485.0 451 54.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 9.7e-134 481.1 455 54.9
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-133 480.7 453 52.3
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.3e-133 480.7 451 53.4
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 3.7e-133 479.2 465 52.9
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 3.7e-133 479.2 456 53.7
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.7e-133 479.2 429 55.9
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-133 478.8 453 52.3
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.4e-132 477.2 448 54.9
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-132 477.2 406 58.9
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 9.1e-132 474.6 448 52.5
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 9.1e-132 474.6 453 52.3
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.2e-131 474.2 457 53.6
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 5.9e-131 471.9 463 52.5
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.2e-130 469.9 448 52.2
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.2e-130 469.9 448 52.2
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 5.0e-130 468.8 455 52.1
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.1e-129 467.6 463 51.2
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.9e-129 466.8 446 52.9
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-129 466.8 461 52.3
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.9e-129 466.8 461 52.3
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.5e-129 466.5 454 50.7
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.1e-128 463.4 454 51.1
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 6.1e-128 461.8 457 52.3
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.0e-127 459.5 452 52.4
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.0e-127 459.5 452 52.4
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 6.7e-127 458.4 452 52.7
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-126 457.6 459 51.4
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.6e-126 456.4 461 51.2
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 2.6e-126 456.4 452 52.4
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.6e-126 456.4 456 51.3
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 5.7e-126 455.3 343 67.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 5.7e-126 455.3 343 67.1
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 7.5e-126 454.9 449 51.0
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.3e-125 454.1 456 50.9
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.0e-123 446.8 452 50.0
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 3.5e-123 446.0 462 49.1
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 5.9e-123 445.3 439 54.0
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 6.5e-122 441.8 425 54.4
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 4.2e-121 439.1 459 49.9
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.0e-118 430.3 460 51.1
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 9.8e-118 427.9 446 51.8
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.9e-114 416.4 419 50.6
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 7.0e-108 395.2 438 46.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.6e-99 365.9 438 45.9
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.6e-99 365.9 436 46.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.6e-98 362.1 438 45.9
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.7e-96 355.9 434 44.9
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.0e-96 355.1 480 41.9
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 8.3e-93 345.1 455 43.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 9.9e-86 321.6 350 48.9
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 6.6e-82 308.9 312 55.4
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 5.8e-78 295.8 206 73.3
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.1e-76 288.9 370 41.9
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.7e-66 255.4 210 59.5
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-59 235.0 203 56.7
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.7e-59 233.8 203 56.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.9e-55 219.2 163 63.2
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.2e-51 208.4 212 52.4
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-47 194.5 161 60.2
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.8e-42 177.9 326 35.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 8.5e-29 132.5 124 50.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-27 128.6 265 34.7
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 4.4e-17 93.6 103 49.5
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 4.5e-14 83.6 88 50.0
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.0e-13 80.1 109 42.2
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.1e-12 79.0 90 50.0
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.0e-10 70.9 68 51.5
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 1.2e-09 68.9 160 31.9
SGA_v2.0_scaffold86G26891 Striga asiatica HOM05D003903 ORTHO05D402899 5.9e-06 56.6 39 59.0


User provided reference genes

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