Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.9e-220 767.7 439 100.0
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.2e-218 763.1 439 99.5
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.2e-179 632.1 612 67.0
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 7.7e-141 504.6 352 79.0
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 8.5e-132 474.6 437 60.6
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 2.6e-125 453.0 437 58.1
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 3.4e-120 436.0 437 56.1
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 9.4e-115 417.9 464 53.0
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.6e-114 416.0 459 53.4
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 8.6e-108 394.8 437 53.3
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.4e-104 382.5 431 59.9
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 5.0e-100 369.0 437 50.6
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 3.3e-99 366.3 438 48.9
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 8.0e-98 361.7 439 47.2
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 4.4e-96 355.9 436 48.4
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 4.4e-96 355.9 436 47.7
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 2.2e-95 353.6 437 48.3
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 2.9e-95 353.2 437 48.5
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.4e-94 350.9 438 47.9
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 5.4e-94 349.0 436 46.1
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 2.7e-93 346.7 417 47.2
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 6.0e-93 345.5 436 47.9
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.1e-91 341.3 439 46.9
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.2e-90 335.5 425 47.5
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.3e-89 333.6 439 45.6
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 5.2e-89 332.4 434 45.6
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 6.8e-89 332.0 437 46.9
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.2e-88 331.3 437 47.6
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 1.2e-88 331.3 437 47.1
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 7.5e-88 328.6 373 51.2
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 1.3e-87 327.8 474 43.7
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 6.4e-87 325.5 376 51.1
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.3e-87 325.1 438 45.7
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 4.1e-86 322.8 437 43.5
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 9.2e-86 321.6 439 45.3
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.3e-84 317.8 431 44.8
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 2.3e-84 317.0 465 41.5
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.9e-84 316.2 429 43.6
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 3.9e-84 316.2 424 43.6
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 1.1e-83 314.7 437 43.2
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 7.3e-83 312.0 542 40.0
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 1.6e-82 310.8 436 42.7
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 2.8e-82 310.1 440 43.6
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 6.2e-82 308.9 428 43.9
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 1.4e-81 307.8 369 50.4
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 2.3e-81 307.0 428 43.2
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 3.1e-81 306.6 438 43.4
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 3.1e-81 306.6 438 44.3
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.2e-80 304.7 437 46.9
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 4.4e-80 302.8 406 46.1
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 2.2e-79 300.4 432 44.7
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.2e-79 300.4 437 43.0
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.4e-78 297.7 439 41.5
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 4.1e-78 296.2 439 41.7
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 5.4e-78 295.8 437 40.7
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 9.2e-78 295.0 436 41.3
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.1e-77 293.9 436 43.3
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.5e-77 293.1 431 42.9
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 6.0e-77 292.4 437 40.3
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 7.8e-77 292.0 431 41.1
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.0e-76 291.6 425 40.5
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 1.0e-76 291.6 437 40.7
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 5.1e-76 289.3 437 40.3
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 8.6e-76 288.5 436 44.7
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.1e-75 288.1 436 42.4
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 1.1e-75 288.1 437 40.5
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.5e-75 287.7 437 46.5
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 7.3e-75 285.4 439 40.8
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 2.1e-74 283.9 437 43.2
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.1e-73 281.6 436 42.7
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 2.4e-73 280.4 441 39.9
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.0e-72 277.3 436 42.9
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 2.6e-72 276.9 441 39.2
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 7.6e-72 275.4 415 46.7
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 1.7e-71 274.2 438 41.1
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 2.2e-71 273.9 440 44.3
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 2.9e-71 273.5 437 38.7
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 3.8e-71 273.1 444 39.2
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 3.2e-70 270.0 436 38.8
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 5.4e-70 269.2 453 38.4
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 5.4e-70 269.2 453 38.4
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 7.1e-70 268.9 446 37.7
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 7.1e-70 268.9 442 44.1
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.6e-69 267.7 437 44.6
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 2.7e-69 266.9 453 38.4
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.0e-68 265.0 325 48.0
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 3.0e-68 263.5 441 40.6
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 8.7e-68 261.9 428 38.3
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 9.6e-67 258.5 436 37.4
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 8.1e-66 255.4 303 49.2
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 4.0e-65 253.1 432 38.0
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 6.9e-65 252.3 437 36.6
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 1.5e-64 251.1 437 39.1
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 4.4e-64 249.6 432 39.1
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.7e-63 247.7 495 34.3
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.7e-63 247.7 415 44.1
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 3.8e-63 246.5 346 43.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 6.4e-63 245.7 441 39.7
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.4e-62 244.6 592 32.9
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 3.0e-60 236.9 437 36.6
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 2.1e-58 230.7 462 34.2
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 1.4e-57 228.0 401 37.7
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 9.0e-57 225.3 418 35.9
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 6.4e-55 219.2 439 35.5
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 4.2e-54 216.5 452 35.6
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 7.1e-54 215.7 473 36.6
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 9.3e-54 215.3 247 47.8
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.2e-53 214.9 418 35.2
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 1.6e-53 214.5 388 38.1
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.6e-53 214.5 287 42.9
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 3.0e-52 210.3 321 40.2
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 2.4e-49 200.7 446 35.9
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 6.9e-49 199.1 410 35.1
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 3.9e-44 183.3 350 36.9
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 6.7e-44 182.6 437 36.4
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 2.5e-43 180.6 437 30.2
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.4e-41 174.9 317 38.2
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 4.5e-40 169.9 210 46.2
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.3e-39 168.3 203 46.3
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 1.3e-36 158.3 306 36.6
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.3e-36 158.3 212 49.5
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 5.1e-36 156.4 433 28.9
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 5.3e-33 146.4 434 29.0
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 2.6e-32 144.1 246 35.4
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.2e-31 141.0 414 32.1
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 1.2e-29 135.2 206 37.9
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 5.1e-28 129.8 157 42.7
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.8e-25 121.3 173 44.5
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.3e-23 115.2 341 32.8
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 2.9e-23 114.0 135 46.7
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 3.2e-22 110.5 213 38.0
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 7.9e-21 105.9 99 52.5
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 2.0e-19 101.3 382 24.6
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 2.8e-18 97.4 432 24.3
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.7e-18 97.1 345 27.0
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.0e-17 92.8 99 48.5
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.6e-16 91.7 102 49.0
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 2.0e-16 91.3 252 27.0
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 3.8e-15 87.0 155 38.7
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-13 82.0 155 36.1
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 4.7e-13 80.1 151 36.4
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 8.0e-13 79.3 98 45.9
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 1.5e-11 75.1 113 43.4
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-11 75.1 467 24.2
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.0e-11 74.7 137 38.0
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 2.2e-10 71.2 206 27.2
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 2.0e-08 64.7 82 47.6
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 1.3e-07 62.0 74 48.6


User provided reference genes

Program Settings