Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.7e-148 529.6 332 100.0
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 1.0e-145 520.4 332 98.2
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 8.4e-132 474.2 332 90.7
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.9e-107 393.3 332 81.9
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 2.8e-87 326.2 334 71.0
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 1.7e-76 290.4 338 57.4
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 8.0e-74 281.6 325 59.1
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 1.0e-68 264.6 327 57.5
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 2.3e-68 263.5 331 61.3
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.2e-66 257.7 201 93.5
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 3.3e-59 233.0 299 59.5
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 1.6e-58 230.7 322 52.8
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 2.3e-57 226.9 326 57.1
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 7.5e-56 221.9 291 58.4
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 8.3e-55 218.4 335 40.6
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 1.6e-53 214.2 321 55.5
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 1.3e-52 211.1 322 54.0
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 8.6e-52 208.4 292 53.8
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 4.3e-51 206.1 338 55.3
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 2.1e-50 203.8 306 40.8
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.1e-49 201.4 333 46.5
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 1.4e-49 201.1 299 49.2
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 6.8e-49 198.7 324 36.7
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 3.4e-48 196.4 327 51.7
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 5.8e-48 195.7 335 38.8
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 7.5e-48 195.3 287 41.8
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.3e-47 194.5 328 47.6
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 2.2e-47 193.7 331 50.8
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 2.2e-47 193.7 331 50.8
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 3.7e-47 193.0 331 51.4
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 2.4e-46 190.3 333 49.8
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 2.4e-46 190.3 333 49.8
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 2.4e-46 190.3 323 44.3
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 5.4e-46 189.1 322 49.7
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 3.5e-45 186.4 332 48.5
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 3.5e-45 186.4 328 36.6
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 1.0e-44 184.9 332 50.0
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 1.3e-44 184.5 330 50.6
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 5.0e-44 182.6 321 36.1
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 1.5e-43 181.0 334 46.1
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 1.5e-43 181.0 334 50.3
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 2.5e-43 180.3 337 50.7
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 5.6e-43 179.1 334 50.0
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 2.1e-42 177.2 339 51.9
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 2.8e-42 176.8 336 48.5
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 3.6e-42 176.4 323 45.5
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 1.1e-41 174.9 280 54.3
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 1.1e-41 174.9 331 50.2
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 3.1e-41 173.3 312 36.5
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 5.8e-40 169.1 296 53.7
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 5.8e-40 169.1 338 50.0
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 1.3e-39 167.9 325 48.6
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 6.4e-39 165.6 338 49.7
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 2.4e-38 163.7 152 55.3
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 5.4e-38 162.5 339 46.6
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 5.4e-38 162.5 303 50.2
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 2.7e-37 160.2 322 51.9
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 1.7e-36 157.5 322 45.3
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 2.8e-34 150.2 339 49.6
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 3.6e-34 149.8 333 51.1
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 2.4e-33 147.1 326 40.8
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 5.8e-32 142.5 141 55.3
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 1.3e-31 141.4 326 46.0
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 1.7e-31 141.0 322 45.3
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 3.8e-31 139.8 322 42.5
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 8.4e-31 138.7 327 45.6
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 1.9e-30 137.5 263 34.6
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 7.1e-30 135.6 191 63.9
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 1.6e-29 134.4 322 42.9
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 4.6e-29 132.9 322 42.2
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.0e-28 131.7 327 45.3
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 1.3e-28 131.3 309 46.3
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 2.3e-28 130.6 325 44.6
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 3.9e-28 129.8 324 45.1
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 1.1e-27 128.3 329 46.8
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 5.6e-27 125.9 320 41.6
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 2.8e-26 123.6 161 42.9
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 3.6e-26 123.2 163 40.5
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 4.7e-26 122.9 149 47.0
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 8.1e-26 122.1 333 44.7
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 1.2e-24 118.2 307 47.2
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 2.8e-18 97.1 147 44.2
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 4.0e-17 93.2 149 41.6
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 7.6e-16 89.0 138 37.0
Potri.008G141700 Populus trichocarpa HOM05D007655 ORTHO05D009698 1.3e-15 88.2 177 33.9
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 1.1e-14 85.1 165 31.5
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.4e-14 84.7 126 37.3
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 9.3e-14 82.0 104 38.5
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 5.3e-09 66.2 291 41.6
Gorai.001G205200 Gossypium raimondii HOM05D007655 ORTHO05D009698 5.8e-08 62.8 98 38.8
Gohir.D07G184750 Gossypium hirsutum HOM05D007655 ORTHO05D009698 1.3e-07 61.6 108 39.8
ATR0030G034 Amborella trichopoda HOM05D007655 ORTHO05D009698 2.2e-07 60.8 172 27.3
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 5.5e-06 56.2 91 26.4
CARHR262550 Cardamine hirsuta HOM05D006858 ORTHO05D008767 9.3e-06 55.5 87 28.7


User provided reference genes

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