Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.0e-114 414.8 219 100.0
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.3e-112 409.8 219 99.1
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.7e-112 408.3 219 98.6
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.1e-111 406.8 219 98.2
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.2e-111 405.2 219 98.2
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 8.6e-109 397.1 227 94.3
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.0e-102 374.4 219 92.2
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 4.6e-86 321.6 233 74.7
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 6.6e-85 317.8 223 75.3
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 6.6e-85 317.8 223 75.3
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 3.3e-84 315.5 223 74.9
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 4.3e-84 315.1 227 74.9
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.6e-83 313.2 225 74.7
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 2.6e-81 305.8 220 72.3
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 7.6e-81 304.3 172 93.0
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 1.3e-80 303.5 226 72.1
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.3e-80 303.5 225 71.6
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 2.9e-80 302.4 226 72.6
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.9e-80 301.6 220 72.7
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 8.4e-80 300.8 230 70.0
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 1.1e-79 300.4 221 71.9
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.1e-79 300.4 194 77.8
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.4e-79 300.1 194 77.3
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 1.4e-79 300.1 223 71.7
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 2.4e-79 299.3 221 74.2
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 4.2e-79 298.5 200 77.5
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 7.1e-79 297.7 202 76.2
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.2e-78 297.0 222 70.7
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 2.1e-78 296.2 207 73.4
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.7e-78 295.8 208 72.1
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 3.5e-78 295.4 214 71.5
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 6.0e-78 294.7 233 68.7
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 7.9e-78 294.3 208 71.6
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 7.9e-78 294.3 188 80.9
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 1.3e-77 293.5 222 71.2
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.3e-77 293.5 222 71.6
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.3e-77 293.5 235 69.8
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.7e-77 293.1 202 75.7
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 2.3e-77 292.7 223 67.3
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 3.0e-77 292.4 224 72.8
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 3.0e-77 292.4 223 69.5
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 3.9e-77 292.0 200 73.5
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.9e-77 292.0 208 71.2
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 8.7e-77 290.8 215 69.3
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.1e-76 290.4 202 73.8
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.1e-76 290.4 202 73.8
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 1.5e-76 290.0 199 75.9
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 4.3e-76 288.5 216 72.7
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 4.3e-76 288.5 217 71.4
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 4.3e-76 288.5 225 70.2
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 7.4e-76 287.7 237 66.2
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 2.8e-75 285.8 199 73.9
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 4.8e-75 285.0 220 71.4
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 6.2e-75 284.6 180 81.7
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 6.9e-74 281.2 221 69.2
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.2e-73 280.4 229 65.9
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.0e-73 279.6 225 69.3
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 1.7e-72 276.6 188 77.1
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.9e-72 275.8 219 66.7
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 6.4e-72 274.6 215 67.0
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.4e-71 272.7 205 70.2
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 7.1e-71 271.2 211 65.4
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.6e-70 270.0 211 65.9
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 1.6e-70 270.0 223 67.3
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 2.7e-70 269.2 206 69.4
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 7.9e-70 267.7 221 64.3
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.0e-69 267.3 220 66.4
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 8.7e-69 264.2 178 75.8
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.5e-68 263.5 207 68.6
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 4.3e-68 261.9 214 65.9
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 9.6e-68 260.8 217 64.1
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.8e-67 258.5 199 67.3
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 8.1e-67 257.7 199 67.3
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 8.1e-67 257.7 185 67.6
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 8.1e-67 257.7 220 61.4
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.8e-66 256.5 217 63.1
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 1.8e-66 256.5 206 62.6
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.6e-65 252.7 181 71.3
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 7.6e-65 251.1 202 63.9
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.2e-64 249.6 202 64.4
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.6e-62 243.4 174 73.6
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.7e-62 242.7 186 68.8
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.5e-62 242.3 169 72.2
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 3.5e-62 242.3 219 62.1
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.5e-62 242.3 186 68.8
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 7.9e-62 241.1 177 68.9
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 7.9e-62 241.1 219 62.6
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 3.9e-61 238.8 175 69.1
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 5.1e-61 238.4 223 60.1
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.7e-61 238.0 230 60.0
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.7e-61 238.0 230 60.0
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.1e-60 237.3 170 72.9
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.5e-60 236.9 177 67.2
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 3.3e-60 235.7 174 69.0
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.3e-59 233.8 197 64.0
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.1e-59 233.0 222 56.3
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 3.7e-59 232.3 157 75.2
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 4.8e-59 231.9 213 59.6
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 4.8e-59 231.9 213 59.6
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.1e-58 229.2 202 63.4
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 3.1e-58 229.2 213 59.2
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 3.1e-58 229.2 213 59.2
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 3.1e-58 229.2 213 59.2
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 3.1e-58 229.2 157 73.2
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 4.1e-58 228.8 182 65.9
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 4.1e-58 228.8 171 66.1
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 5.3e-58 228.4 219 59.4
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 9.0e-58 227.6 156 73.1
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.3e-56 223.8 201 60.7
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.3e-56 223.8 201 60.7
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 8.5e-56 221.1 157 72.6
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 2.5e-55 219.5 157 70.1
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 3.6e-54 215.7 156 73.7
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 5.1e-53 211.8 157 71.3
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 8.7e-53 211.1 188 54.3
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.1e-52 210.7 180 60.6
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.5e-52 210.3 137 78.1
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 1.5e-52 210.3 155 64.5
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 4.3e-52 208.8 157 68.2
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 3.7e-51 205.7 155 65.2
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 3.7e-51 205.7 157 70.1
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 8.2e-51 204.5 157 68.8
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.4e-50 203.8 199 57.8
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 4.1e-50 202.2 147 69.4
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 6.9e-50 201.4 144 69.4
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 9.1e-50 201.1 199 55.3
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 5.9e-49 198.4 172 62.2
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.0e-48 197.6 136 72.8
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.3e-48 197.2 181 57.5
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.7e-48 196.8 186 60.2
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.7e-48 196.8 186 60.2
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.8e-48 195.7 143 74.8
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 8.5e-48 194.5 125 79.2
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.1e-47 194.1 118 84.7
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 5.5e-47 191.8 204 51.0
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 2.8e-43 179.5 194 50.5
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 2.6e-41 172.9 183 51.9
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 1.9e-39 166.8 137 59.9
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.6e-38 162.5 105 77.1
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.0e-37 161.0 105 76.2
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 3.0e-37 159.5 224 48.2
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 4.4e-36 155.6 224 45.5
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 2.8e-35 152.9 214 48.1
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 4.1e-34 149.1 157 49.0
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 7.0e-34 148.3 108 71.3
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 1.5e-23 114.0 87 65.5
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 3.0e-21 106.3 157 44.6
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 6.8e-21 105.1 204 34.3
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.7e-11 72.8 80 52.5
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.7e-11 72.8 107 43.9
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.4e-10 70.9 103 42.7


User provided reference genes

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