Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-215 752.7 386 100.0
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-125 453.8 388 67.5
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.4e-124 449.1 396 66.4
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 9.8e-124 447.6 400 63.8
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-123 446.4 396 66.2
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.2e-122 441.0 396 65.7
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.2e-122 441.0 388 66.5
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.0e-121 439.9 396 65.9
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 2.1e-110 403.3 399 58.6
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 3.2e-106 389.4 397 56.2
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 1.6e-105 387.1 397 56.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 3.3e-95 352.8 401 52.1
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 4.4e-92 342.4 386 52.6
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 7.6e-92 341.7 386 52.6
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 7.6e-92 341.7 386 52.6
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.9e-91 339.7 391 52.4
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 4.9e-91 339.0 391 49.6
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 1.1e-90 337.8 385 51.4
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 3.2e-90 336.3 401 51.4
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 5.4e-90 335.5 385 52.7
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 7.1e-90 335.1 398 49.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 4.6e-89 332.4 396 50.8
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 7.8e-89 331.6 388 52.3
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 1.3e-88 330.9 399 50.6
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 2.3e-88 330.1 396 49.5
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 1.9e-87 327.0 385 53.2
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 1.9e-87 327.0 397 50.1
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 3.3e-87 326.2 396 50.0
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 8.1e-86 321.6 398 48.2
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 2.4e-85 320.1 421 48.5
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 5.8e-84 315.5 398 47.5
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 5.8e-84 315.5 385 49.1
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 7.6e-84 315.1 383 50.9
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 1.3e-83 314.3 382 49.5
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.7e-83 313.9 397 47.9
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 2.9e-83 313.2 390 47.2
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 3.8e-83 312.8 396 48.7
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 3.8e-83 312.8 396 48.7
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 1.1e-82 311.2 398 47.2
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 1.4e-82 310.8 395 48.9
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 2.4e-82 310.1 384 50.3
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 2.4e-82 310.1 400 46.8
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 3.2e-82 309.7 400 45.5
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.2e-82 309.7 384 50.3
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 7.1e-82 308.5 400 45.5
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 7.1e-82 308.5 384 50.3
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 9.3e-82 308.1 395 47.1
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 1.2e-81 307.8 398 46.2
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 1.2e-81 307.8 398 46.2
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 2.1e-81 307.0 398 46.2
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 2.7e-81 306.6 398 46.2
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.7e-81 306.6 384 49.7
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 3.5e-81 306.2 398 46.5
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 3.5e-81 306.2 398 46.5
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 4.6e-81 305.8 400 45.0
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 4.6e-81 305.8 383 49.1
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 7.8e-81 305.1 388 47.7
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 1.3e-80 304.3 418 46.2
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 3.9e-80 302.8 384 46.6
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 3.9e-80 302.8 380 48.4
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 1.1e-79 301.2 397 46.6
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 1.5e-79 300.8 383 48.3
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 1.5e-79 300.8 397 47.9
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 1.9e-79 300.4 400 44.5
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 4.3e-79 299.3 400 44.8
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 9.6e-79 298.1 386 47.4
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 9.6e-79 298.1 398 46.5
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 1.3e-78 297.7 400 44.5
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 1.3e-78 297.7 400 44.8
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 2.8e-78 296.6 397 44.8
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 3.6e-78 296.2 400 44.2
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 3.6e-78 296.2 400 44.2
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 1.8e-77 293.9 384 48.4
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 1.8e-77 293.9 399 45.1
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 4.0e-77 292.7 386 44.3
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 4.0e-77 292.7 396 46.7
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 6.9e-77 292.0 397 46.1
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 9.0e-77 291.6 400 44.2
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 2.6e-76 290.0 376 46.8
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 4.5e-76 289.3 374 48.7
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 7.6e-76 288.5 388 47.7
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 1.3e-75 287.7 379 46.2
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 2.2e-75 287.0 384 46.1
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 1.1e-74 284.6 386 45.1
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 1.4e-74 284.3 386 45.3
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 1.9e-74 283.9 391 46.8
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 3.2e-74 283.1 387 45.7
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 5.4e-74 282.3 400 43.0
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 7.1e-74 282.0 385 44.9
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 1.6e-73 280.8 376 45.5
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 2.1e-73 280.4 382 44.5
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 6.0e-73 278.9 384 46.4
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 7.9e-73 278.5 387 44.4
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 1.3e-72 277.7 385 45.5
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 2.3e-72 276.9 384 45.1
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 3.0e-72 276.6 397 45.1
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.1e-71 274.6 376 45.2
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.3e-71 273.1 388 46.4
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 4.3e-71 272.7 398 43.2
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 2.1e-70 270.4 386 45.1
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 2.9e-67 260.0 387 43.2
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 5.3e-61 239.2 381 40.4
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 3.8e-59 233.0 389 40.4
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 2.1e-57 227.3 343 42.9
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.7e-57 226.9 343 42.9
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.5e-55 221.1 343 42.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 4.8e-54 216.1 120 89.2
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 4.5e-52 209.5 389 40.9
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 1.7e-51 207.6 206 58.3
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.0e-51 206.1 134 85.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-46 190.3 110 85.5
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 5.0e-43 179.5 282 42.2
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 5.0e-43 179.5 400 37.5
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 4.2e-42 176.4 401 32.7
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 5.5e-42 176.0 130 68.5
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 7.9e-41 172.2 414 33.1
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.7e-38 164.5 421 32.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 4.8e-38 162.9 124 69.4
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 5.3e-37 159.5 117 64.1
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.7e-35 154.5 388 32.0
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 5.5e-34 149.4 119 63.0
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.4e-32 144.8 408 30.1
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 2.3e-32 144.1 345 33.6
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.4e-29 134.8 119 54.6
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 3.1e-29 133.7 119 55.5
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 5.3e-29 132.9 295 33.9
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.6e-28 130.6 119 55.5
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 2.6e-28 130.6 121 54.5
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-27 128.3 68 94.1
Prupe.8G229300 Prunus persica HOM05D000650 ORTHO05D000735 7.2e-26 122.5 79 69.6
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.4e-24 118.2 127 52.0
TWI14G0262 Tripterygium wilfordii HOM05D000650 ORTHO05D000735 9.7e-23 112.1 86 61.6
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 9.1e-21 105.5 150 44.0
Thecc.01G168500 Theobroma cacao HOM05D000004 ORTHO05D000002 9.1e-21 105.5 78 60.3
Thecc.01G232700 Theobroma cacao HOM05D000004 ORTHO05D000002 9.1e-21 105.5 78 60.3
Thecc.03G066200 Theobroma cacao HOM05D000004 ORTHO05D000002 1.3e-19 101.7 78 59.0
Thecc.02G260600 Theobroma cacao HOM05D000004 ORTHO05D000002 3.6e-17 93.6 76 57.9
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.5e-15 88.2 90 54.4
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.0e-15 87.8 57 73.7
Thecc.05G097300 Theobroma cacao HOM05D000004 ORTHO05D000002 2.0e-15 87.8 59 66.1
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.3e-11 75.1 74 56.8
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.5e-10 69.7 37 86.5
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.2e-09 68.6 51 62.7
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 2.3e-08 64.3 78 38.5
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 4.0e-08 63.5 34 79.4
Hma1.2p1_0500F.1_g166980 Hydrangea macrophylla HOM05D014633 ORTHO05D000002 3.4e-07 60.5 132 31.1
Rhsim13G0121300 Rhododendron simsii HOM05D000004 ORTHO05D000002 3.4e-07 60.5 40 72.5
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 4.4e-07 60.1 38 63.2
Hma1.2p1_3477F.1_g336310 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 7.5e-07 59.3 87 35.6
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 7.5e-07 59.3 32 75.0
TWI14G0868 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 9.8e-07 58.9 80 38.8
RcHm_v2.0_Chr7g0243211 Rosa chinensis HOM05D000004 ORTHO05D000002 2.8e-06 57.4 111 32.4
SHI50854 Sapria himalayana HOM05D000004 ORTHO05D000002 3.7e-06 57.0 80 40.0
SHI00352 Sapria himalayana HOM05D000004 ORTHO05D000002 4.9e-06 56.6 80 38.8
SHI15021 Sapria himalayana HOM05D000004 ORTHO05D000002 4.9e-06 56.6 80 38.8
SHI54655 Sapria himalayana HOM05D000004 ORTHO05D000002 4.9e-06 56.6 80 38.8
SHI55032 Sapria himalayana HOM05D000004 ORTHO05D000002 4.9e-06 56.6 80 38.8
SHI07308 Sapria himalayana HOM05D000004 ORTHO05D000002 8.3e-06 55.8 80 38.8
SHI50872 Sapria himalayana HOM05D000004 ORTHO05D000002 8.3e-06 55.8 80 38.8


User provided reference genes

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