Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.1e-232 808.1 415 100.0
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.7e-230 802.4 415 99.3
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.7e-222 775.8 415 96.4
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.4e-221 771.9 415 96.1
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.3e-200 701.0 415 89.6
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-183 645.6 385 88.6
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 3.8e-174 615.1 315 99.7
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 3.0e-147 525.8 315 83.8
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 1.6e-111 407.1 315 67.6
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 7.3e-101 371.7 329 61.4
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 6.9e-99 365.2 318 62.3
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 2.6e-98 363.2 316 60.1
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 6.4e-97 358.6 312 60.9
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 4.2e-96 355.9 331 60.4
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 2.7e-95 353.2 316 57.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.3e-94 350.9 315 60.0
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 1.8e-94 350.5 316 58.5
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 1.8e-94 350.5 317 59.3
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.1e-92 343.6 317 58.0
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 2.8e-92 343.2 312 60.3
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.8e-91 340.5 283 63.3
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 2.4e-91 340.1 317 58.7
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 3.1e-91 339.7 315 58.1
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 7.9e-87 325.1 318 57.5
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.3e-86 323.6 316 53.8
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 3.0e-86 323.2 314 58.0
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.9e-86 322.8 319 54.5
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 6.7e-86 322.0 336 52.4
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 8.7e-86 321.6 319 53.9
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 2.5e-85 320.1 314 58.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.3e-85 319.7 286 58.4
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 5.6e-85 318.9 316 56.0
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 9.6e-85 318.2 320 53.4
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.8e-84 316.6 319 55.8
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 4.8e-84 315.8 318 53.8
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 6.2e-84 315.5 319 53.9
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 3.1e-83 313.2 316 56.0
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 4.0e-83 312.8 284 57.0
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 5.3e-83 312.4 320 53.1
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 9.0e-83 311.6 316 55.4
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 2.6e-82 310.1 316 52.8
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 7.6e-82 308.5 321 53.3
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.1e-80 304.7 321 52.0
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.4e-80 304.3 318 52.2
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 2.5e-80 303.5 319 51.7
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 4.2e-80 302.8 319 53.0
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 9.3e-80 301.6 316 55.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 2.7e-79 300.1 315 52.7
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.7e-79 300.1 317 53.6
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 3.5e-79 299.7 338 50.6
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 4.6e-79 299.3 315 53.0
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.0e-78 298.1 321 52.0
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 3.9e-78 296.2 315 52.4
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 6.7e-78 295.4 316 51.9
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 8.7e-78 295.0 315 54.3
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.5e-77 294.3 318 53.1
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 4.3e-77 292.7 285 53.3
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 5.3e-75 285.8 319 54.5
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 5.3e-75 285.8 315 52.1
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 1.2e-74 284.6 318 49.4
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.0e-74 283.9 316 48.4
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 2.0e-74 283.9 317 50.8
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 5.9e-74 282.3 317 53.6
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 5.9e-74 282.3 309 49.2
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 1.3e-73 281.2 320 50.0
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 2.9e-73 280.0 316 50.0
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 6.5e-73 278.9 313 54.3
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 6.5e-73 278.9 317 54.3
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.1e-72 278.1 317 49.5
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.5e-72 276.9 284 52.5
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 4.2e-72 276.2 284 54.6
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 4.2e-72 276.2 322 49.1
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.2e-71 274.6 313 52.4
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 3.6e-71 273.1 316 49.7
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 2.8e-68 263.5 317 50.5
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 8.2e-68 261.9 317 47.3
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 6.9e-67 258.8 312 52.9
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 4.5e-66 256.1 324 46.6
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.7e-65 254.2 317 49.2
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 2.9e-65 253.4 323 46.1
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.9e-65 253.4 315 45.7
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 8.5e-65 251.9 318 46.5
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.1e-64 251.5 316 46.2
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 3.2e-64 250.0 321 47.4
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 5.5e-64 249.2 317 47.0
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 1.2e-63 248.1 281 49.5
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.8e-62 244.2 317 44.2
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 3.9e-62 243.0 324 45.4
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 6.7e-62 242.3 287 49.8
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 8.8e-62 241.9 278 49.6
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 1.5e-61 241.1 308 46.8
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.8e-60 236.1 316 43.4
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.4e-59 233.8 320 44.7
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.5e-58 231.1 316 43.7
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.0e-58 230.7 335 42.7
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 2.6e-58 230.3 292 45.2
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.0e-57 228.4 301 43.9
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.4e-56 224.6 317 41.6
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.4e-56 224.6 278 44.2
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 7.2e-56 222.2 297 45.8
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.2e-55 221.5 316 42.4
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 4.7e-55 219.5 292 44.2
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 1.4e-54 218.0 380 41.3
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 1.8e-54 217.6 318 42.8
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 3.0e-54 216.9 316 41.5
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 3.9e-54 216.5 282 45.0
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 5.7e-53 212.6 305 41.6
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 7.4e-53 212.2 252 46.8
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 7.4e-53 212.2 315 41.0
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 9.7e-53 211.8 341 40.5
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.1e-51 208.4 305 41.6
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.4e-51 208.0 314 45.9
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 2.4e-51 207.2 245 47.3
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.1e-51 206.8 317 42.0
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 4.5e-50 203.0 317 40.4
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 4.5e-50 203.0 295 41.4
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.0e-49 201.8 312 44.6
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 1.0e-49 201.8 316 39.9
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.3e-49 201.4 318 42.1
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.3e-49 201.4 301 40.9
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 2.2e-49 200.7 276 44.2
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 2.2e-49 200.7 319 40.8
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 3.8e-49 199.9 320 42.5
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 1.9e-48 197.6 315 41.9
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.5e-48 197.2 318 41.8
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.5e-48 197.2 322 41.0
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 4.2e-48 196.4 318 41.8
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 2.7e-47 193.7 318 40.3
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 8.0e-47 192.2 320 40.3
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.5e-45 188.0 276 41.7
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 2.0e-45 187.6 314 41.1
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.1e-43 181.8 269 40.9
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 3.1e-43 180.3 312 40.4
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 3.1e-43 180.3 252 43.3
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.3e-43 179.5 307 36.5
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 2.7e-42 177.2 309 38.5
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 2.7e-42 177.2 316 38.6
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 2.2e-41 174.1 317 37.2
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 2.2e-41 174.1 317 37.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.8e-41 173.3 197 50.3
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 1.2e-39 168.3 326 38.3
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 2.3e-38 164.1 314 37.9
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 3.7e-36 156.8 365 32.6
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 4.8e-36 156.4 332 38.6
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 6.3e-36 156.0 309 37.5
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 3.1e-35 153.7 325 36.6
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 3.1e-35 153.7 327 37.0
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 3.1e-35 153.7 325 36.6
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 5.4e-35 152.9 316 33.2
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.4e-35 152.9 192 44.3
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.6e-34 151.4 310 36.5
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 1.6e-34 151.4 323 37.2
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.6e-34 151.4 310 36.5
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.8e-33 146.7 321 33.6
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 6.1e-31 139.4 284 37.3
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 1.8e-30 137.9 312 34.0
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 5.2e-30 136.3 351 31.3
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 1.2e-29 135.2 314 34.1
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 3.4e-29 133.7 312 34.0
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.2e-28 131.0 256 34.4
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 8.6e-25 119.0 265 33.2
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.1e-24 118.6 296 33.8
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 1.9e-24 117.9 360 30.8
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.6e-24 116.3 103 55.3
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.6e-23 114.8 313 29.4
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.6e-23 114.8 278 33.5
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 4.7e-23 113.2 280 34.3
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 9.2e-19 99.0 313 29.1
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 5.0e-17 93.2 301 28.2
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 4.3e-16 90.1 271 29.5
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 5.2e-14 83.2 150 35.3
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 6.8e-14 82.8 310 23.2
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 2.9e-12 77.4 148 35.1
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 1.1e-11 75.5 139 36.0
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 1.4e-11 75.1 67 56.7
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 1.4e-11 75.1 67 56.7
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.9e-11 74.7 84 45.2
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-10 72.0 65 53.8
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.2e-10 72.0 65 53.8
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 1.6e-10 71.6 125 32.8
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.6e-10 71.6 125 32.8
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.9e-09 67.0 80 41.2
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 6.6e-09 66.2 52 65.4
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 6.6e-09 66.2 80 41.2
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 9.5e-08 62.4 310 23.5
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.4e-06 58.5 89 34.8
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.3e-06 57.8 91 36.3


User provided reference genes

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