Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.4e-176 622.1 321 100.0
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.7e-175 618.6 321 99.4
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.0e-174 614.4 321 98.4
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.4e-168 594.3 321 96.0
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.8e-163 579.3 300 99.3
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.8e-163 579.3 353 87.5
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 3.4e-138 495.4 297 87.9
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.1e-107 394.0 296 73.6
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 3.6e-103 379.0 299 70.6
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 3.9e-86 322.4 309 59.2
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 8.8e-86 321.2 311 57.2
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.1e-83 314.3 296 59.5
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.4e-83 313.2 217 77.4
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 4.1e-83 312.4 306 53.3
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 7.0e-83 311.6 292 59.6
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 9.1e-83 311.2 296 60.1
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 5.5e-80 302.0 311 56.6
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 5.5e-80 302.0 166 91.0
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.4e-78 297.4 289 57.1
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.4e-78 297.4 296 55.4
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 3.0e-78 296.2 288 56.2
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 2.2e-76 290.0 309 53.1
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 2.2e-76 290.0 300 54.7
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.4e-75 287.3 294 54.8
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.4e-75 286.6 294 55.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 7.0e-75 285.0 285 57.2
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 1.6e-74 283.9 321 52.0
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 4.5e-74 282.3 296 55.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 5.9e-74 282.0 299 55.9
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 7.7e-74 281.6 302 52.6
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.2e-73 280.0 294 54.4
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 6.5e-73 278.5 298 52.3
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 4.2e-72 275.8 328 49.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.1e-71 273.5 290 55.5
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 2.7e-71 273.1 302 50.3
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.7e-71 272.3 294 51.7
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 3.0e-70 269.6 287 53.0
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 5.7e-69 265.4 255 55.7
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 7.5e-69 265.0 301 50.8
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 9.8e-69 264.6 306 50.7
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.7e-68 263.8 293 49.1
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.8e-68 263.1 292 54.5
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 4.8e-68 262.3 301 51.2
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.1e-67 261.2 307 48.9
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.1e-67 261.2 299 51.2
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.1e-67 261.2 285 52.3
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.4e-67 260.0 298 51.3
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.4e-67 260.0 293 48.1
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 5.4e-67 258.8 301 48.8
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.4e-67 258.8 267 54.7
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 2.7e-66 256.5 268 53.7
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 4.5e-66 255.8 287 53.0
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 7.7e-66 255.0 287 50.5
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 7.7e-66 255.0 287 53.3
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.3e-65 254.2 296 49.0
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.5e-64 250.8 312 49.7
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.5e-64 250.8 287 51.2
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 2.5e-64 250.0 287 52.3
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.3e-64 249.6 292 51.0
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 5.5e-64 248.8 297 48.1
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.2e-63 247.7 293 48.8
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.6e-63 247.3 286 47.9
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.4e-62 244.2 299 48.2
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.2e-61 241.1 290 49.3
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 4.9e-60 235.7 261 49.8
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.4e-59 234.2 296 45.3
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 9.2e-59 231.5 266 49.6
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 7.8e-58 228.4 263 49.4
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 3.9e-57 226.1 209 58.4
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.5e-56 224.2 301 44.5
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.9e-56 223.8 229 57.6
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 4.3e-56 222.6 251 47.4
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 9.5e-56 221.5 284 45.1
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.6e-55 220.7 211 57.3
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 3.1e-54 216.5 295 44.1
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 6.8e-54 215.3 284 44.0
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.2e-53 214.5 296 42.6
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.2e-53 214.5 269 46.1
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 4.4e-53 212.6 192 60.4
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 4.1e-51 206.1 254 45.7
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 5.4e-51 205.7 254 45.7
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 5.4e-51 205.7 290 41.4
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.5e-50 203.0 240 50.0
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.3e-49 201.1 282 43.6
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 2.8e-47 193.4 250 42.8
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.2e-46 189.1 268 44.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 4.4e-45 186.0 215 53.5
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.1e-43 181.4 198 53.0
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 4.1e-43 179.5 284 40.8
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 6.0e-42 175.6 197 45.2
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.3e-41 173.7 250 42.4
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.0e-41 173.3 211 46.4
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.6e-41 172.2 199 51.3
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 5.6e-40 169.1 235 43.4
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 8.1e-39 165.2 235 47.2
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 7.6e-37 158.7 193 45.1
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 4.9e-36 156.0 252 37.7
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 3.5e-34 149.8 194 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.3e-33 147.9 269 35.3
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 3.0e-33 146.7 238 39.9
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 1.5e-32 144.4 204 42.6
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.3e-32 143.3 157 48.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 8.1e-31 138.7 261 36.0
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.4e-30 137.1 136 50.0
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.0e-29 134.0 197 42.6
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 5.8e-29 132.5 94 72.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.3e-28 131.3 217 39.6
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 6.0e-26 122.5 221 33.0
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.9e-25 119.8 108 60.2
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 5.1e-25 119.4 109 55.0
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.9e-24 117.5 184 39.7
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 7.3e-24 115.5 141 45.4
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 6.2e-23 112.5 258 29.5
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.4e-22 111.3 62 87.1
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 4.0e-22 109.8 121 52.9
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 4.0e-22 109.8 62 85.5
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 9.0e-22 108.6 54 90.7
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.8e-21 105.9 80 68.8
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.8e-21 105.9 80 68.8
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 7.6e-21 105.5 73 75.3
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.8e-20 103.2 240 31.7
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 2.3e-17 94.0 101 50.5
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.3e-17 94.0 62 72.6
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.3e-14 82.8 61 63.9
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 2.6e-13 80.5 122 38.5
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 3.8e-12 76.6 186 32.3
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 8.4e-12 75.5 112 38.4
Lsat_1_v5_gn_8_10160 Lactuca sativa HOM05D006306 ORTHO05D007912 1.6e-07 61.2 272 23.2


User provided reference genes

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