Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.0e-49 198.4 111 100.0
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 7.1e-43 177.2 103 92.2
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.5e-34 148.3 110 72.7
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 5.1e-33 144.4 77 97.4
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 5.6e-32 141.0 77 97.4
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 7.4e-32 140.6 77 96.1
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 2.0e-29 132.5 77 85.7
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 4.5e-29 131.3 77 85.7
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 2.9e-28 128.6 79 82.3
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 1.9e-27 125.9 77 83.1
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 1.9e-27 125.9 77 83.1
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 1.9e-27 125.9 77 83.1
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 4.2e-27 124.8 84 77.4
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 5.5e-27 124.4 79 79.7
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.6e-26 122.9 79 78.5
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.6e-26 122.9 79 78.5
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 2.7e-26 122.1 79 78.5
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 2.7e-26 122.1 76 78.9
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 3.5e-26 121.7 79 74.7
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 4.6e-26 121.3 79 77.2
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 6.0e-26 120.9 93 71.0
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 6.0e-26 120.9 76 80.3
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 7.9e-26 120.6 77 77.9
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 7.9e-26 120.6 77 77.9
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 7.9e-26 120.6 77 79.2
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.0e-25 120.2 79 75.9
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 1.3e-25 119.8 77 76.6
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 1.3e-25 119.8 77 76.6
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 1.3e-25 119.8 77 79.2
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 1.3e-25 119.8 77 79.2
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 2.3e-25 119.0 76 77.6
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 3.0e-25 118.6 76 76.3
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 3.9e-25 118.2 76 76.3
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 3.9e-25 118.2 77 77.9
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 5.1e-25 117.9 77 79.2
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 5.1e-25 117.9 76 80.3
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 6.7e-25 117.5 77 76.6
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 1.1e-24 116.7 77 76.6
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 3.3e-24 115.2 77 75.3
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 3.3e-24 115.2 74 78.4
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 4.3e-24 114.8 76 73.7
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 4.3e-24 114.8 75 76.0
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 5.6e-24 114.4 84 73.8
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 5.6e-24 114.4 75 77.3
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 7.4e-24 114.0 77 72.7
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 7.4e-24 114.0 77 74.0
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 7.4e-24 114.0 77 75.3
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 1.3e-23 113.2 76 75.0
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 1.3e-23 113.2 77 72.7
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 3.7e-23 111.7 75 74.7
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 4.8e-23 111.3 77 76.6
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 4.8e-23 111.3 75 76.0
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 4.8e-23 111.3 75 76.0
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 4.8e-23 111.3 80 70.0
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 6.2e-23 110.9 75 74.7
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 6.2e-23 110.9 75 74.7
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 6.2e-23 110.9 75 74.7
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 6.2e-23 110.9 77 72.7
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 1.1e-22 110.2 77 70.1
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 1.4e-22 109.8 74 74.3
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 2.4e-22 109.0 74 75.7
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 3.1e-22 108.6 77 72.7
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 3.1e-22 108.6 76 72.4
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 4.0e-22 108.2 74 73.0
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 6.9e-22 107.5 75 73.3
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 6.9e-22 107.5 75 70.7
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 6.9e-22 107.5 77 71.4
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 9.0e-22 107.1 77 71.4
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 1.2e-21 106.7 74 71.6
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 1.2e-21 106.7 75 69.3
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 2.0e-21 105.9 77 71.4
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 3.4e-21 105.1 75 76.0
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 4.5e-21 104.8 77 67.5
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 1.0e-20 103.6 75 65.3
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 1.3e-20 103.2 77 70.1
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.3e-20 103.2 75 74.7
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.3e-20 103.2 75 74.7
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 1.3e-20 103.2 77 70.1
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 1.3e-20 103.2 77 63.6
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 1.4e-19 99.8 76 60.5
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 3.2e-19 98.6 76 60.5
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 5.5e-19 97.8 95 56.8
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 3.5e-18 95.1 78 61.5
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 1.8e-17 92.8 79 63.3
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 5.1e-17 91.3 75 66.7
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 1.1e-16 90.1 75 65.3
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 1.9e-16 89.4 77 61.0
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 3.3e-16 88.6 98 51.0
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 4.3e-16 88.2 59 72.9
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 1.1e-14 83.6 76 56.6
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.8e-14 82.8 45 97.8
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 5.0e-12 74.7 77 57.1
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 3.2e-11 72.0 44 81.8
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 1.6e-10 69.7 48 75.0
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 1.8e-09 66.2 62 51.6
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 1.3e-07 60.1 37 83.8


User provided reference genes

Program Settings