Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 1.6e-55 219.2 112 100.0
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.0e-32 142.5 90 84.4
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.7e-24 113.6 55 100.0
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 5.3e-22 107.8 57 93.0
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 9.1e-22 107.1 57 87.7
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 1.2e-21 106.7 56 91.1
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 3.5e-21 105.1 50 100.0
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 7.7e-21 104.0 54 88.9
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 7.7e-21 104.0 57 82.5
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 1.7e-20 102.8 56 83.9
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.2e-20 102.4 57 86.0
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 2.2e-20 102.4 56 83.9
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 3.8e-20 101.7 55 87.3
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 6.5e-20 100.9 55 85.5
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 6.5e-20 100.9 57 84.2
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 6.5e-20 100.9 54 88.9
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 1.5e-19 99.8 57 80.7
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 1.5e-19 99.8 56 80.4
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 1.9e-19 99.4 57 82.5
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 3.2e-19 98.6 51 90.2
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 4.2e-19 98.2 58 84.5
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 5.5e-19 97.8 64 68.8
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 5.5e-19 97.8 63 71.4
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 5.5e-19 97.8 63 69.8
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 5.5e-19 97.8 63 69.8
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 5.5e-19 97.8 63 69.8
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 7.2e-19 97.4 63 69.8
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 7.2e-19 97.4 58 81.0
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 7.2e-19 97.4 55 81.8
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 7.2e-19 97.4 57 75.4
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 9.4e-19 97.1 53 83.0
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 9.4e-19 97.1 57 77.2
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 9.4e-19 97.1 53 86.8
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 1.2e-18 96.7 72 61.1
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 1.6e-18 96.3 51 88.2
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 1.6e-18 96.3 57 75.4
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 1.6e-18 96.3 57 78.9
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 2.1e-18 95.9 57 75.4
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 2.1e-18 95.9 58 75.9
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 3.6e-18 95.1 57 78.9
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 3.6e-18 95.1 57 78.9
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 3.6e-18 95.1 57 78.9
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 3.6e-18 95.1 55 80.0
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 3.6e-18 95.1 55 80.0
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 4.7e-18 94.7 56 76.8
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 8.0e-18 94.0 64 70.3
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 8.0e-18 94.0 52 80.8
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 8.0e-18 94.0 57 73.7
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 8.0e-18 94.0 52 82.7
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 8.0e-18 94.0 57 75.4
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 1.0e-17 93.6 51 80.4
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 1.0e-17 93.6 59 76.3
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 1.0e-17 93.6 51 80.4
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 1.0e-17 93.6 57 75.4
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 1.0e-17 93.6 56 78.6
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 1.4e-17 93.2 51 80.4
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 1.8e-17 92.8 55 76.4
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 2.3e-17 92.4 57 73.7
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 3.0e-17 92.0 57 73.7
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 4.0e-17 91.7 53 79.2
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 6.7e-17 90.9 59 69.5
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.0e-16 89.4 46 91.3
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 3.3e-16 88.6 41 97.6
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 3.3e-16 88.6 41 97.6
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 4.4e-16 88.2 51 74.5
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 4.4e-16 88.2 58 67.2
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 7.5e-16 87.4 50 82.0
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 1.3e-15 86.7 57 64.9
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 1.3e-15 86.7 53 75.5
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 1.7e-15 86.3 51 70.6
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 3.7e-15 85.1 41 90.2
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 4.8e-15 84.7 51 72.5
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 4.8e-15 84.7 58 63.8
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 6.3e-15 84.3 41 90.2
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 8.2e-15 84.0 49 77.6
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 1.4e-14 83.2 41 90.2
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 7.0e-14 80.9 48 72.9
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.2e-13 80.1 41 85.4
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 1.6e-13 79.7 44 79.5
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.6e-13 79.7 42 81.0
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 2.0e-13 79.3 41 82.9
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 4.5e-13 78.2 44 81.8
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 5.9e-13 77.8 41 85.4
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 5.9e-13 77.8 42 78.6
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 7.7e-13 77.4 40 87.5
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 7.7e-13 77.4 40 87.5
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 3.8e-12 75.1 39 84.6
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 1.6e-10 69.7 45 66.7
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 6.1e-10 67.8 34 94.1
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 3.0e-09 65.5 51 70.6
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 1.2e-08 63.5 34 82.4
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 9.8e-08 60.5 58 48.3
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 1.3e-07 60.1 43 60.5


User provided reference genes

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