Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.2e-146 520.8 264 100.0
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.2e-146 520.8 264 100.0
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 3.1e-145 518.5 264 99.6
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.8e-137 492.7 264 96.2
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.4e-136 488.4 264 95.8
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.0e-135 486.9 263 95.4
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.5e-135 484.2 264 94.7
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.3e-130 469.9 264 91.7
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 2.7e-109 399.1 262 77.5
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 4.8e-98 361.7 272 69.9
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 4.5e-96 355.1 262 69.8
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 9.4e-94 347.4 271 66.8
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 4.0e-92 342.0 270 66.7
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.3e-90 334.3 260 66.9
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.4e-89 333.6 279 63.4
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.1e-89 332.4 260 66.5
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 4.5e-88 328.6 262 66.8
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.0e-87 327.4 270 64.4
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.1e-86 323.9 260 65.8
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 7.2e-86 321.2 265 66.4
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 7.2e-86 321.2 269 64.7
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 4.0e-84 315.5 261 63.2
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 5.7e-83 311.6 261 64.8
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.7e-83 311.6 261 64.4
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 7.5e-83 311.2 261 64.4
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.3e-82 310.5 261 64.4
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.7e-82 310.1 270 62.6
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.2e-82 309.7 261 65.5
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 3.7e-82 308.9 271 62.0
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.4e-81 307.0 280 60.7
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.3e-79 299.7 256 62.1
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.8e-79 298.9 260 60.8
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 1.1e-78 297.4 267 60.7
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.1e-78 297.4 260 61.5
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 1.5e-78 297.0 252 59.5
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 5.6e-78 295.0 259 61.8
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 9.5e-78 294.3 257 60.7
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 2.1e-77 293.1 260 60.0
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 3.6e-77 292.4 257 61.9
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.0e-76 290.8 258 59.7
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-76 290.4 241 63.5
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 2.3e-76 289.7 260 59.2
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 3.4e-75 285.8 259 59.1
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 9.8e-75 284.3 273 56.0
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 9.8e-75 284.3 259 57.5
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.7e-74 283.5 257 60.3
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 6.4e-74 281.6 262 61.5
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 1.4e-73 280.4 258 60.5
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 5.4e-73 278.5 166 88.0
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.6e-72 276.9 259 58.7
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.0e-72 276.6 273 54.2
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 4.6e-72 275.4 267 58.1
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.0e-71 272.7 230 61.7
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.9e-71 272.3 230 61.3
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 5.6e-70 268.5 263 56.7
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 5.6e-70 268.5 271 55.4
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 7.3e-70 268.1 263 56.3
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 3.6e-69 265.8 261 55.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.0e-69 264.6 259 54.1
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.0e-68 264.2 242 57.9
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.8e-68 263.5 269 54.3
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.3e-68 263.1 262 52.7
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 5.2e-68 261.9 265 54.3
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 5.2e-68 261.9 262 53.1
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.6e-67 259.6 262 52.3
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 3.4e-67 259.2 262 52.3
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.7e-66 256.9 259 52.9
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.1e-65 254.2 254 56.7
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 1.1e-65 254.2 268 52.6
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 1.9e-65 253.4 258 55.0
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 5.4e-65 251.9 258 55.8
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 3.5e-64 249.2 259 53.7
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 4.6e-64 248.8 247 54.3
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 6.0e-64 248.4 254 53.5
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 3.9e-63 245.7 259 56.4
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 5.0e-63 245.4 220 61.4
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 1.1e-62 244.2 253 53.4
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.5e-62 243.8 261 53.6
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 5.6e-62 241.9 174 68.4
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 9.5e-62 241.1 265 52.8
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 2.1e-61 240.0 251 53.4
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-60 237.7 262 49.2
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.3e-60 236.5 260 53.5
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.3e-60 236.5 260 53.5
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 3.4e-59 232.6 249 50.6
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 9.8e-59 231.1 269 50.2
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 2.2e-58 229.9 254 52.8
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.9e-58 229.6 266 47.0
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.9e-58 229.6 266 47.0
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 2.9e-58 229.6 252 51.2
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 4.9e-58 228.8 256 49.2
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 1.4e-57 227.3 262 49.6
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 4.1e-57 225.7 253 50.6
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 7.1e-57 224.9 270 47.8
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 9.2e-57 224.6 251 51.4
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 1.2e-56 224.2 262 48.9
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 2.1e-56 223.4 249 52.6
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 2.1e-56 223.4 262 51.1
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 2.7e-56 223.0 264 52.3
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.7e-56 223.0 254 46.9
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 6.0e-56 221.9 251 52.2
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.0e-55 221.1 248 52.0
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.3e-55 220.7 256 47.3
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.3e-55 220.7 252 53.2
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 6.6e-55 218.4 259 50.6
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.1e-54 217.6 251 51.0
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 1.5e-54 217.2 254 51.2
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 7.3e-54 214.9 262 49.2
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 7.3e-54 214.9 262 49.2
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 7.3e-54 214.9 270 49.6
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 9.5e-54 214.5 262 48.5
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 9.5e-54 214.5 248 47.6
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.8e-53 213.0 248 50.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 3.6e-53 212.6 264 48.9
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 8.1e-53 211.5 258 48.8
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 8.1e-53 211.5 202 55.9
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.1e-52 211.1 251 50.2
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 6.8e-52 208.4 250 49.2
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.8e-52 208.4 269 45.0
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 4.4e-51 205.7 263 47.9
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.4e-51 205.7 204 53.4
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.9e-50 203.0 249 47.4
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 3.7e-50 202.6 250 48.0
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 6.4e-50 201.8 262 45.4
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 1.9e-49 200.3 199 52.8
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.9e-49 200.3 248 50.0
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 4.1e-49 199.1 268 45.5
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.7e-48 196.4 196 53.1
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.7e-48 196.4 196 53.1
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 6.0e-48 195.3 194 54.1
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 2.3e-47 193.4 227 49.3
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 3.0e-47 193.0 253 45.8
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.1e-46 191.0 194 52.6
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.1e-44 184.5 248 44.0
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.0e-44 182.6 209 54.1
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 5.8e-43 178.7 116 71.6
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 5.8e-43 178.7 253 43.9
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 4.9e-42 175.6 157 53.5
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 1.4e-41 174.1 291 38.5
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 2.4e-41 173.3 117 69.2
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 7.1e-41 171.8 158 52.5
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 1.2e-40 171.0 252 43.3
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.6e-40 170.6 150 56.7
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.7e-39 167.2 244 45.5
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-37 160.6 105 74.3
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 6.9e-36 155.2 125 59.2
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.3e-33 144.8 131 52.7
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 8.4e-26 121.7 108 53.7
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 1.6e-24 117.5 125 45.6
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.3e-23 114.4 82 69.5
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 3.4e-19 99.8 249 32.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.1e-16 90.5 70 60.0
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 2.3e-15 87.0 83 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 3.0e-15 86.7 90 42.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 1.3e-13 81.3 154 30.5
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 2.1e-13 80.5 281 26.3
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 6.9e-12 75.5 169 27.2
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 9.7e-06 55.1 158 30.4


User provided reference genes

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