Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1535.0 752 100.0
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1430.6 758 92.6
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 0.0e+00 1417.1 752 94.0
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1406.3 758 92.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 0.0e+00 1252.3 760 82.1
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 0.0e+00 1240.3 663 91.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 0.0e+00 1094.3 767 71.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 0.0e+00 1083.2 769 71.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 0.0e+00 1082.8 766 71.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 9.1e-275 950.3 757 63.3
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.8e-270 936.0 710 64.1
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 9.7e-269 930.2 746 61.3
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.5e-266 922.9 749 61.5
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.9e-264 916.0 765 60.4
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.7e-263 912.1 763 59.4
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 5.3e-259 897.9 788 58.9
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.2e-258 896.7 759 59.9
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 5.0e-257 891.3 708 61.3
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.5e-256 887.9 764 59.2
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.6e-255 886.3 728 60.3
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.0e-254 883.6 735 60.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.0e-254 883.6 710 61.5
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.5e-253 879.8 754 59.2
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.2e-252 875.9 767 59.1
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.8e-252 874.8 758 58.7
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 8.2e-252 874.0 770 58.7
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.2e-250 870.2 763 57.9
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.1e-248 863.6 761 59.3
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-248 863.6 722 59.8
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.2e-248 862.1 722 60.1
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.2e-248 861.7 722 60.0
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 7.2e-248 860.9 751 57.8
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 7.2e-248 860.9 777 57.3
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.1e-247 859.4 729 59.5
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.7e-247 858.2 761 58.5
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 8.0e-247 857.4 758 56.3
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 3.0e-246 855.5 763 57.7
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.2e-245 853.6 764 56.7
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 7.5e-245 850.9 720 59.2
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.8e-244 849.0 689 61.2
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 8.3e-244 847.4 749 58.7
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 2.7e-242 842.4 753 57.4
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.3e-241 840.1 766 56.8
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.3e-241 839.3 753 57.8
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 3.8e-241 838.6 760 55.7
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 3.8e-241 838.6 764 55.9
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.1e-240 837.0 753 57.4
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 1.5e-240 836.6 729 57.5
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.5e-240 836.6 732 58.2
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.5e-240 836.6 755 57.4
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.9e-240 836.3 754 57.3
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 7.2e-240 834.3 761 57.6
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.1e-239 832.8 710 58.7
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.2e-237 827.0 756 57.5
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.5e-237 826.6 707 58.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 1.5e-237 826.6 709 57.8
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.0e-237 826.2 710 57.9
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.7e-237 824.7 713 57.2
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.5e-237 824.3 746 56.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 9.8e-237 823.9 710 57.5
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.7e-236 823.2 746 55.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.4e-235 820.1 760 55.8
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.1e-235 818.5 764 54.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 5.4e-235 818.1 763 55.3
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.2e-234 817.0 645 63.1
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.3e-232 808.5 766 53.4
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.6e-231 806.6 711 58.5
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 8.9e-230 800.8 708 55.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 1.5e-229 800.0 901 49.6
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.0e-229 799.7 709 56.8
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.6e-229 799.3 708 57.8
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 9.8e-229 797.3 758 54.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 6.4e-228 794.7 779 52.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.7e-226 789.3 764 52.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.0e-225 785.8 709 55.9
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 8.6e-225 784.3 779 52.2
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 9.5e-224 780.8 754 52.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 6.2e-223 778.1 761 52.7
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.4e-222 776.9 710 55.9
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.5e-221 773.5 651 59.9
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.7e-220 768.8 662 58.3
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.2e-218 763.8 629 61.5
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.0e-218 761.5 735 53.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.9e-217 758.8 711 52.7
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 6.6e-217 758.1 730 54.4
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.5e-216 756.9 727 52.0
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.5e-216 756.9 724 52.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.5e-216 756.1 726 51.9
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.6e-215 752.3 712 52.7
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.1e-214 750.7 726 51.9
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.8e-214 750.0 764 51.0
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 2.0e-213 746.5 711 52.9
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.5e-213 744.6 768 50.0
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.3e-212 743.8 713 52.3
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.2e-212 743.0 724 51.4
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 6.4e-212 741.5 707 52.6
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 6.4e-212 741.5 729 51.9
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 8.3e-212 741.1 717 53.7
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.9e-211 740.0 774 51.6
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.4e-211 739.6 765 49.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.4e-211 739.6 624 59.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.6e-210 736.9 719 52.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 3.5e-210 735.7 749 50.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 4.6e-210 735.3 729 51.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 4.6e-210 735.3 729 51.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 3.9e-209 732.3 771 50.1
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 5.6e-208 728.4 775 50.3
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 9.5e-208 727.6 739 50.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.2e-207 727.2 775 49.4
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.8e-207 726.1 709 52.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.2e-207 724.9 796 48.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.4e-206 723.0 714 51.4
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.2e-204 716.5 713 51.1
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.1e-203 714.1 704 53.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.6e-199 700.3 735 51.6
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.1e-199 699.9 727 51.0
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.1e-199 699.9 705 53.2
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-199 699.1 704 52.6
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.7e-196 690.3 764 47.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.9e-195 686.8 711 51.3
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.9e-192 676.8 565 61.2
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.3e-191 674.1 685 51.1
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-191 672.9 761 48.4
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 3.6e-191 672.5 714 48.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.8e-190 670.2 743 49.0
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.9e-177 625.9 714 46.8
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 6.7e-177 625.2 596 55.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.1e-163 581.3 769 43.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.4e-163 580.9 707 45.4
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 3.2e-163 579.7 569 53.3
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 5.5e-163 578.9 760 45.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 5.5e-139 499.2 584 46.2
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 9.7e-136 488.4 336 66.4
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 5.0e-124 449.5 466 48.5
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.0e-121 440.3 404 54.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.7e-103 381.3 428 48.6
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 5.4e-102 376.3 337 55.8
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 8.6e-100 369.0 425 45.9
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 3.3e-99 367.1 450 42.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.6e-98 363.6 485 42.1
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 6.8e-97 359.4 245 71.0
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 3.9e-84 317.0 601 33.9
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.4e-81 308.5 336 45.2
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.9e-78 298.1 611 33.9
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.5e-75 288.5 588 33.2
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.0e-68 264.2 338 45.0
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 7.6e-64 249.6 156 71.8
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.7e-63 248.4 204 59.3
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.2e-55 221.5 231 49.4
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.2e-54 217.6 245 48.2
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 7.9e-53 213.0 150 68.0
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.2e-47 194.9 119 68.1
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-44 185.7 239 44.4
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.0e-39 169.5 126 64.3
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.7e-37 161.4 205 45.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-37 161.0 99 71.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-37 161.0 99 71.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-37 161.0 99 71.7
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.0e-36 159.5 411 29.4
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 2.3e-36 158.3 175 46.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.0e-27 128.6 250 32.4
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.0e-27 128.6 270 35.2
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.8e-26 124.8 162 42.6
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.3e-26 123.6 201 38.3
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.1e-25 121.3 258 30.2
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 8.0e-21 106.7 237 33.3
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.6e-19 101.7 117 43.6
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.2e-18 98.6 73 60.3
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.7e-18 97.8 141 33.3
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.1e-13 82.0 72 56.9
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 6.8e-12 77.0 46 71.7
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 9.1e-09 66.6 56 55.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 9.1e-09 66.6 56 55.4


User provided reference genes

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