Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.2e-167 590.5 297 100.0
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.0e-128 462.2 267 89.9
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.0e-128 461.5 270 90.0
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 6.6e-128 461.1 270 90.0
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 4.0e-125 451.8 270 87.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 6.8e-109 397.9 270 80.0
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 7.8e-105 384.4 271 72.7
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.3e-104 382.9 274 71.9
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 5.1e-104 381.7 279 68.8
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 6.6e-104 381.3 275 73.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 5.6e-103 378.3 268 73.5
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 9.6e-103 377.5 273 72.2
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.6e-100 369.4 270 70.7
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 4.4e-100 368.6 273 68.1
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 9.9e-100 367.5 263 72.6
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 9.9e-100 367.5 271 70.8
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.3e-99 367.1 268 71.6
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.2e-99 366.3 264 70.1
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 4.9e-99 365.2 263 71.9
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 6.4e-99 364.8 286 66.8
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 6.4e-99 364.8 263 69.6
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.9e-98 363.2 286 66.8
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.2e-98 362.1 269 70.6
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.4e-98 361.7 263 69.6
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.2e-97 360.5 259 71.0
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.2e-97 360.5 271 67.9
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.6e-97 360.1 277 65.7
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.6e-97 360.1 262 70.6
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 2.7e-97 359.4 266 70.7
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 6.0e-97 358.2 263 70.7
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.0e-96 357.5 267 68.5
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.7e-96 356.7 264 70.8
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 2.3e-96 356.3 267 68.9
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.3e-96 356.3 279 65.2
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.3e-96 356.3 277 64.6
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 3.0e-96 355.9 266 69.2
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 3.0e-96 355.9 261 69.7
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.9e-96 355.5 270 67.8
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 5.1e-96 355.1 271 66.8
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.1e-96 355.1 267 68.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.7e-96 354.4 266 69.9
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.1e-95 354.0 261 69.7
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.9e-95 353.2 261 69.7
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.5e-95 352.8 267 68.9
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 7.3e-95 351.3 280 66.4
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 7.3e-95 351.3 280 66.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 7.3e-95 351.3 263 69.6
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.3e-94 350.5 262 69.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.6e-94 350.1 273 65.9
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.6e-94 350.1 275 65.5
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 3.6e-94 349.0 265 68.3
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 8.1e-94 347.8 260 69.6
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.8e-93 346.7 261 66.3
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.1e-93 345.9 266 68.4
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 3.1e-93 345.9 266 68.4
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 4.0e-93 345.5 269 65.1
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 5.3e-93 345.1 269 64.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 5.3e-93 345.1 280 63.9
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 6.9e-93 344.7 255 68.6
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 9.0e-93 344.4 269 64.3
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 9.0e-93 344.4 269 64.3
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 9.0e-93 344.4 304 69.1
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.2e-92 344.0 269 64.3
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.2e-92 344.0 269 64.3
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 2.0e-92 343.2 263 65.8
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 2.0e-92 343.2 269 65.1
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.6e-92 342.8 280 63.6
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 7.6e-92 341.3 272 67.6
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 9.9e-92 340.9 266 67.3
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.3e-91 340.5 266 64.7
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.2e-91 339.7 267 63.7
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.2e-91 339.7 274 62.8
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 8.4e-91 337.8 261 67.4
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 8.4e-91 337.8 263 65.0
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.4e-90 337.0 271 62.7
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.9e-90 336.7 266 63.9
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.9e-90 336.7 269 63.6
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.9e-90 336.7 265 67.5
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.2e-90 335.9 264 64.4
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.2e-90 335.5 269 63.2
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 5.4e-90 335.1 269 62.8
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 9.3e-90 334.3 269 63.2
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 9.3e-90 334.3 297 58.9
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.2e-89 334.0 268 63.8
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.2e-89 334.0 272 63.6
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.2e-89 334.0 264 64.4
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.7e-89 332.8 258 66.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.5e-89 332.4 269 63.2
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 3.5e-89 332.4 269 63.2
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 4.6e-89 332.0 264 63.6
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.0e-88 330.9 316 57.0
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.3e-88 330.5 269 62.8
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.3e-88 329.7 269 62.8
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.3e-88 329.7 281 61.6
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 3.0e-88 329.3 269 62.5
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 3.0e-88 329.3 269 62.5
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 5.1e-88 328.6 281 60.9
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 6.7e-88 328.2 265 64.2
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 6.7e-88 328.2 265 64.2
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 6.7e-88 328.2 265 64.2
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 6.7e-88 328.2 265 64.2
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.1e-87 327.4 265 64.2
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.9e-87 326.6 264 63.6
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.3e-87 325.9 263 63.1
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 5.6e-87 325.1 270 63.0
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.8e-86 322.8 271 62.0
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 6.2e-86 321.6 265 63.0
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.6e-84 316.2 236 72.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.3e-83 313.9 258 62.0
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.9e-83 312.8 262 61.5
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 6.4e-83 311.6 267 60.7
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.5e-82 309.7 371 48.8
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.6e-81 307.0 290 56.6
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.7e-81 306.2 275 59.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 5.1e-80 302.0 291 56.7
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 9.6e-79 297.7 293 55.3
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.1e-77 292.7 262 61.1
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 4.0e-77 292.4 272 54.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.6e-76 289.7 261 57.1
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 3.2e-74 282.7 268 56.0
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.5e-74 282.0 269 57.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.6e-73 278.9 276 56.2
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 6.0e-73 278.5 265 55.1
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.3e-72 277.3 266 54.1
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.8e-72 276.9 264 54.9
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.6e-70 270.4 178 71.9
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 3.4e-68 262.7 264 52.3
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 5.0e-59 232.3 277 45.8
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.9e-58 230.3 129 80.6
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.7e-57 225.7 271 44.6
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.8e-56 223.8 264 45.1
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 3.3e-55 219.5 266 45.9
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.4e-55 219.2 259 49.8
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.0e-52 210.3 259 45.6
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.6e-52 209.9 152 67.1
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.2e-35 153.7 130 70.0
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 8.8e-32 141.7 94 72.3
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.7e-27 127.5 135 53.3
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 3.0e-24 116.7 126 54.0
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.9e-24 115.2 126 51.6
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.2e-22 110.5 73 71.2
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.2e-22 110.5 72 69.4
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.6e-17 93.2 269 28.3
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 3.4e-15 86.7 144 43.1
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.3e-14 84.7 44 84.1
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 6.6e-11 72.4 107 39.3
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 8.0e-09 65.5 37 89.2
FAN04G1060 Fragaria x ananassa HOM05D000025 ORTHO05D000040 5.8e-07 59.3 80 48.8


User provided reference genes

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