Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4561 Fragaria x ananassa HOM05D003476 ORTHO05D004057 6.1e-39 163.7 83 100.0
FAN03G0251 Fragaria x ananassa HOM05D003476 ORTHO05D004057 5.7e-37 157.1 81 95.1
FvH4_7g24030 Fragaria vesca HOM05D003476 ORTHO05D004057 7.4e-37 156.8 80 98.8
FAN01G1497 Fragaria x ananassa HOM05D003476 ORTHO05D004057 7.4e-37 156.8 80 98.8
RcHm_v2.0_Chr1g0369421 Rosa chinensis HOM05D003476 ORTHO05D004057 5.3e-35 150.6 79 93.7
VMungo0647G2503 Vigna mungo HOM05D003476 ORTHO05D004057 3.2e-32 141.4 78 85.9
Prupe.2G246300 Prunus persica HOM05D003476 ORTHO05D004057 4.2e-32 141.0 77 85.7
Ciclev10032786m.g Citrus clementina HOM05D003476 ORTHO05D004057 2.7e-31 138.3 78 84.6
GSVIVG01016365001 Vitis vinifera HOM05D003476 ORTHO05D004057 6.1e-31 137.1 78 82.1
arahy.Tifrunner.gnm1.ann1.7TWC5I Arachis hypogaea HOM05D003476 ORTHO05D004057 2.3e-30 135.2 78 80.8
arahy.Tifrunner.gnm1.ann1.C86U5P Arachis hypogaea HOM05D003476 ORTHO05D004057 2.3e-30 135.2 78 80.8
Sed0008497 Sechium edule HOM05D003476 ORTHO05D004057 3.0e-30 134.8 77 81.8
Phvul.008G226300 Phaseolus vulgaris HOM05D003476 ORTHO05D004057 3.9e-30 134.4 76 84.2
CiPaw.02G189900 Carya illinoinensis HOM05D003476 ORTHO05D004057 5.1e-30 134.0 76 84.2
Glyma.02G254500 Glycine max HOM05D003476 ORTHO05D004057 6.7e-30 133.7 76 82.9
PGR142G4151 Punica granatum HOM05D003476 ORTHO05D004057 6.7e-30 133.7 77 84.4
Glyma.14G061900 Glycine max HOM05D003476 ORTHO05D004057 8.8e-30 133.3 76 84.2
Medtr5g081900 Medicago truncatula HOM05D003476 ORTHO05D004057 8.8e-30 133.3 78 76.9
Thecc.10G026100 Theobroma cacao HOM05D003476 ORTHO05D004057 1.1e-29 132.9 76 84.2
Sed0009203 Sechium edule HOM05D003476 ORTHO05D004057 2.0e-29 132.1 78 76.9
Cc02_g06900 Coffea canephora HOM05D003476 ORTHO05D004057 2.6e-29 131.7 79 75.9
SalBow6G1938 Salvia bowleyana HOM05D003476 ORTHO05D004057 2.6e-29 131.7 78 79.5
TWI09G0086 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.6e-29 131.7 76 78.9
TWI23G0971 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.6e-29 131.7 76 78.9
HanXRQChr12g0370541 Helianthus annuus HOM05D003476 ORTHO05D004057 3.3e-29 131.3 78 80.8
Lsat_1_v5_gn_5_2880 Lactuca sativa HOM05D003476 ORTHO05D004057 4.4e-29 131.0 78 79.5
Manes.07G125600 Manihot esculenta HOM05D003476 ORTHO05D004057 4.4e-29 131.0 76 82.9
TWI53G1335 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 4.4e-29 131.0 76 77.6
Actinidia13919 Actinidia chinensis HOM05D003476 ORTHO05D004057 5.7e-29 130.6 82 76.8
ClCG07G004000 Citrullus lanatus HOM05D003476 ORTHO05D004057 5.7e-29 130.6 78 78.2
ClCG07G004010 Citrullus lanatus HOM05D003476 ORTHO05D004057 5.7e-29 130.6 78 78.2
TPR.G8041 Trifolium pratense HOM05D003476 ORTHO05D004057 5.7e-29 130.6 76 80.3
unitig_747.g21420 Utricularia gibba HOM05D003476 ORTHO05D004057 5.7e-29 130.6 82 74.4
CANSAT56G1382 Cannabis sativa HOM05D003476 ORTHO05D004057 9.7e-29 129.8 76 80.3
Atru.chr12.241 Acer truncatum HOM05D003476 ORTHO05D004057 1.3e-28 129.4 77 81.8
Haze_17184 Corylus avellana HOM05D003476 ORTHO05D004057 1.3e-28 129.4 75 81.3
Eucgr.G03033 Eucalyptus grandis HOM05D003476 ORTHO05D004057 1.3e-28 129.4 76 81.6
LjContig00357g0022102 Lotus japonicus HOM05D003476 ORTHO05D004057 1.7e-28 129.0 76 81.6
MD01G1147400 Malus domestica HOM05D003476 ORTHO05D004057 1.7e-28 129.0 73 83.6
Oeu039001.1 Olea europaea HOM05D003476 ORTHO05D004057 2.2e-28 128.6 77 77.9
Duzib128G2055 Durio zibethinus HOM05D003476 ORTHO05D004057 2.8e-28 128.3 76 81.6
TWI73G1058 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 2.8e-28 128.3 76 77.6
COL.COLO4_25658 Corchorus olitorius HOM05D003476 ORTHO05D004057 3.7e-28 127.9 75 81.3
BraA03t11468Z Brassica rapa HOM05D003476 ORTHO05D004057 4.8e-28 127.5 88 75.0
Cfa001366 Carpinus fangiana HOM05D003476 ORTHO05D004057 4.8e-28 127.5 73 82.2
Hma1.2p1_2137F.1_g314920 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 4.8e-28 127.5 76 81.6
Lj1A950T61 Lonicera japonica HOM05D003476 ORTHO05D004057 4.8e-28 127.5 78 76.9
Nitab4.5_0003770g0040 Nicotiana tabacum HOM05D003476 ORTHO05D004057 4.8e-28 127.5 79 77.2
Prupe.1G392100 Prunus persica HOM05D003476 ORTHO05D004057 4.8e-28 127.5 80 75.0
Carub.0004s2209 Capsella rubella HOM05D003476 ORTHO05D004057 6.3e-28 127.1 86 75.6
SGA_v2.0_scaffold76G25080 Striga asiatica HOM05D003476 ORTHO05D004057 6.3e-28 127.1 72 81.9
TAR633G0614 Trochodendron aralioides HOM05D003476 ORTHO05D004057 6.3e-28 127.1 78 78.2
BcaC01g05451 Brassica carinata HOM05D003476 ORTHO05D004057 8.2e-28 126.7 88 75.0
C03p26520 Brassica napus HOM05D003476 ORTHO05D004057 8.2e-28 126.7 88 75.0
Manes.10G017601 Manihot esculenta HOM05D003476 ORTHO05D004057 8.2e-28 126.7 76 80.3
TWI73G1048 Tripterygium wilfordii HOM05D003476 ORTHO05D004057 8.2e-28 126.7 76 76.3
AL4G37540 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.1e-27 126.3 86 75.6
AT2G39960 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 1.1e-27 126.3 86 75.6
BcaB01g03582 Brassica carinata HOM05D003476 ORTHO05D004057 1.1e-27 126.3 79 78.5
Oeu039509.1 Olea europaea HOM05D003476 ORTHO05D004057 1.1e-27 126.3 77 77.9
THA.LOC104810073 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.1e-27 126.3 86 73.3
THA.LOC104824307 Tarenaya hassleriana HOM05D003476 ORTHO05D004057 1.1e-27 126.3 86 74.4
CiPaw.01G295800 Carya illinoinensis HOM05D003476 ORTHO05D004057 1.4e-27 125.9 76 78.9
Gohir.D10G243900 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.4e-27 125.9 76 81.6
Ca_05932_v3 Cicer arietinum L. HOM05D003476 ORTHO05D004057 1.8e-27 125.6 76 75.0
Potri.010G192700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.8e-27 125.6 76 78.9
BcaC02g07386 Brassica carinata HOM05D003476 ORTHO05D004057 2.4e-27 125.2 88 71.6
BolC4t28272H Brassica oleracea HOM05D003476 ORTHO05D004057 2.4e-27 125.2 88 71.6
CARHR134890 Cardamine hirsuta HOM05D003476 ORTHO05D004057 2.4e-27 125.2 87 74.7
LjContig00357g0025168 Lotus japonicus HOM05D003476 ORTHO05D004057 2.4e-27 125.2 76 76.3
MD15G1038100 Malus domestica HOM05D003476 ORTHO05D004057 2.4e-27 125.2 80 72.5
Sopen04g028030 Solanum pennellii HOM05D003476 ORTHO05D004057 2.4e-27 125.2 79 75.9
Carub.0006s3211 Capsella rubella HOM05D003476 ORTHO05D004057 3.1e-27 124.8 88 71.6
MSTRG.8311 Avicennia marina HOM05D003476 ORTHO05D004057 4.1e-27 124.4 77 79.2
Migut.F01426 Erythranthe guttata HOM05D003476 ORTHO05D004057 4.1e-27 124.4 82 73.2
A04p30180 Brassica napus HOM05D003476 ORTHO05D004057 5.3e-27 124.0 88 70.5
Cpa.g.c40050 Carica papaya HOM05D003476 ORTHO05D004057 5.3e-27 124.0 73 82.2
ECA238G4332 Erigeron canadensis HOM05D003476 ORTHO05D004057 5.3e-27 124.0 76 76.3
Gohir.A13G016600 Gossypium hirsutum HOM05D003476 ORTHO05D004057 5.3e-27 124.0 76 78.9
MD08G1058400 Malus domestica HOM05D003476 ORTHO05D004057 5.3e-27 124.0 80 72.5
BcaB06g29118 Brassica carinata HOM05D003476 ORTHO05D004057 7.0e-27 123.6 88 70.5
Gohir.D13G017700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 9.1e-27 123.2 76 78.9
Potri.008G064700 Populus trichocarpa HOM05D003476 ORTHO05D004057 1.2e-26 122.9 76 77.6
AL6G47820 Arabidopsis lyrata HOM05D003476 ORTHO05D004057 1.6e-26 122.5 88 69.3
CSS0000698 Camellia sinensis var. sinensis HOM05D003476 ORTHO05D004057 1.6e-26 122.5 73 79.5
PGSC0003DMG400025078 Solanum tuberosum HOM05D003476 ORTHO05D004057 1.6e-26 122.5 77 76.6
Nn5g27487 Nelumbo nucifera HOM05D003476 ORTHO05D004057 2.0e-26 122.1 76 77.6
Sp4g22270 Schrenkiella parvula HOM05D003476 ORTHO05D004057 2.0e-26 122.1 86 73.3
A03p22400 Brassica napus HOM05D003476 ORTHO05D004057 2.6e-26 121.7 86 74.4
Solyc04g072032.1 Solanum lycopersicum HOM05D003476 ORTHO05D004057 2.6e-26 121.7 77 76.6
A05p06460 Brassica napus HOM05D003476 ORTHO05D004057 3.5e-26 121.3 88 69.3
MBI16_g26377_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 3.5e-26 121.3 78 73.1
Rhsim13G0104300 Rhododendron simsii HOM05D003476 ORTHO05D004057 3.5e-26 121.3 82 70.7
BcaB02g09065 Brassica carinata HOM05D003476 ORTHO05D004057 4.5e-26 120.9 78 74.4
CARHR253320 Cardamine hirsuta HOM05D003476 ORTHO05D004057 4.5e-26 120.9 78 71.8
DCAR_011789 Daucus carota HOM05D003476 ORTHO05D004057 4.5e-26 120.9 73 76.7
Sp6g04580 Schrenkiella parvula HOM05D003476 ORTHO05D004057 4.5e-26 120.9 76 77.6
vmacro10062 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 4.5e-26 120.9 82 73.2
MELO3C025156.2 Cucumis melo HOM05D003476 ORTHO05D004057 5.9e-26 120.6 71 77.5
Thhalv10017265m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 5.9e-26 120.6 88 71.6
HanXRQChr08g0222281 Helianthus annuus HOM05D003476 ORTHO05D004057 5.9e-26 120.6 76 72.4
Duzib106G0197 Durio zibethinus HOM05D003476 ORTHO05D004057 1.3e-25 119.4 78 73.1
Gorai.013G019600 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.3e-25 119.4 73 79.5
Gohir.A10G229700 Gossypium hirsutum HOM05D003476 ORTHO05D004057 1.7e-25 119.0 76 80.3
Gorai.011G280300 Gossypium raimondii HOM05D003476 ORTHO05D004057 1.7e-25 119.0 71 81.7
Nitab4.5_0000099g0220 Nicotiana tabacum HOM05D003476 ORTHO05D004057 2.2e-25 118.6 76 75.0
Sabra08G0047500 Salix brachista HOM05D003476 ORTHO05D004057 2.2e-25 118.6 88 69.3
TAR636G1152 Trochodendron aralioides HOM05D003476 ORTHO05D004057 3.8e-25 117.9 77 75.3
TAR636G3666 Trochodendron aralioides HOM05D003476 ORTHO05D004057 5.0e-25 117.5 77 75.3
RcHm_v2.0_Chr6g0299621 Rosa chinensis HOM05D003476 ORTHO05D004057 1.1e-24 116.3 73 75.3
FAN15G1698 Fragaria x ananassa HOM05D003476 ORTHO05D004057 2.5e-24 115.2 86 65.1
Peaxi162Scf00360g00616 Petunia axillaris HOM05D003476 ORTHO05D004057 4.2e-24 114.4 76 69.7
Sc06g0000400 Simmondsia chinensis HOM05D003476 ORTHO05D004057 4.2e-24 114.4 76 73.7
Nn2g13624 Nelumbo nucifera HOM05D003476 ORTHO05D004057 7.2e-24 113.6 76 72.4
Actinidia00934 Actinidia chinensis HOM05D003476 ORTHO05D004057 9.4e-24 113.2 77 72.7
CAN.G1252.7 Capsicum annuum HOM05D003476 ORTHO05D004057 9.4e-24 113.2 76 71.1
HPP92_016193 Vanilla planifolia HOM05D003476 ORTHO05D004057 2.1e-23 112.1 73 76.7
Thhalv10028970m.g Eutrema salsugineum HOM05D003476 ORTHO05D004057 2.7e-23 111.7 70 75.7
PSO801G0598 Papaver somniferum HOM05D003476 ORTHO05D004057 3.6e-23 111.3 78 70.5
EL10Ac2g04131 Beta vulgaris HOM05D003476 ORTHO05D004057 4.7e-23 110.9 78 66.7
PSO339G6737 Papaver somniferum HOM05D003476 ORTHO05D004057 4.7e-23 110.9 78 70.5
Hma1.2p1_0710F.1_g207290 Hydrangea macrophylla HOM05D003476 ORTHO05D004057 1.4e-22 109.4 76 72.4
Aqoxy214s003 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 2.3e-22 108.6 69 76.8
Aqoxy4G02660 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 4.0e-22 107.8 74 67.6
vmacro06993 Vaccinium macrocarpon HOM05D003476 ORTHO05D004057 4.0e-22 107.8 71 71.8
ATR0618G113 Amborella trichopoda HOM05D003476 ORTHO05D004057 5.2e-22 107.5 72 69.4
Zm00001eb081650 Zea mays HOM05D003476 ORTHO05D004057 6.7e-22 107.1 77 66.2
Os04g0446300 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 1.5e-21 105.9 77 62.3
Os02g0565200 Oryza sativa ssp. japonica HOM05D003476 ORTHO05D004057 2.2e-20 102.1 73 67.1
SEGI_14870 Sequoiadendron giganteum HOM05D003476 ORTHO05D004057 2.8e-20 101.7 74 63.5
SpUn0110_0020 Schrenkiella parvula HOM05D003476 ORTHO05D004057 1.0e-17 93.2 75 66.7
CsaV3_5G008920 Cucumis sativus L. HOM05D003476 ORTHO05D004057 2.9e-17 91.7 61 68.9
Pp3c8_24950 Physcomitrium patens HOM05D003476 ORTHO05D004057 2.9e-17 91.7 76 57.9
Pp3c24_20710 Physcomitrium patens HOM05D003476 ORTHO05D004057 8.5e-17 90.1 76 57.9
MBI14_g25462_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D004057 1.5e-16 89.4 59 72.9
MBI14_g30458_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 1.5e-16 89.4 59 72.9
Mapoly0043s0045 Marchantia polymorpha HOM05D003476 ORTHO05D004057 1.9e-16 89.0 78 52.6
MBI16_g28612_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 5.5e-16 87.4 78 53.8
AT4G04200 Arabidopsis thaliana HOM05D003476 ORTHO05D004057 7.2e-16 87.0 71 66.2
BraA05t19614Z Brassica rapa HOM05D003476 ORTHO05D004057 1.2e-15 86.3 74 60.8
Ah.10g035550 Amaranthus hybridus HOM05D003476 ORTHO05D004057 2.7e-15 85.1 61 63.9
AUR62031591 Chenopodium quinoa HOM05D003476 ORTHO05D004057 2.7e-15 85.1 63 63.5
Duzib114G0190 Durio zibethinus HOM05D003476 ORTHO05D004057 2.3e-14 82.0 51 76.5
AUR62012465 Chenopodium quinoa HOM05D003476 ORTHO05D004057 3.0e-14 81.6 55 69.1
Aa31LG5G19650 Aethionema arabicum HOM05D003476 ORTHO05D004057 5.2e-14 80.9 71 62.0
Ah.16g104950 Amaranthus hybridus HOM05D003476 ORTHO05D004057 2.6e-13 78.6 63 57.1
ECA233G2895 Erigeron canadensis HOM05D003476 ORTHO05D004057 1.3e-12 76.3 49 73.5
C04p07540 Brassica napus HOM05D003476 ORTHO05D004057 1.7e-12 75.9 69 59.4
BolC4t22371H Brassica oleracea HOM05D003476 ORTHO05D004057 1.7e-12 75.9 69 59.4
C04p67700 Brassica napus HOM05D003476 ORTHO05D004057 2.2e-12 75.5 61 63.9
AagrBONN_evm.TU.Sc2ySwM_228.5500 Anthoceros agrestis HOM05D003476 ORTHO05D004057 1.1e-11 73.2 70 47.1
MD07G1214300 Malus domestica HOM05D003476 ORTHO05D004057 1.1e-11 73.2 41 78.0
Migut.F01424 Erythranthe guttata HOM05D003476 ORTHO05D004057 9.1e-11 70.1 42 73.8
MBI14_g06613_MAGBIO Magnolia biondii HOM05D003476 ORTHO05D000010 9.1e-11 70.1 50 62.0
Hund03462 Selenicereus undatus HOM05D003476 ORTHO05D004057 2.7e-10 68.6 41 75.6
Psat2g035640 Pisum sativum HOM05D003476 ORTHO05D004057 7.7e-10 67.0 40 77.5
Aqoxy2G00973 Aquilegia oxysepala HOM05D003476 ORTHO05D004057 3.8e-09 64.7 61 59.0
Dinv34422 Davidia involucrata HOM05D002885 ORTHO05D003350 5.0e-09 64.3 35 82.9
PRCOL_00000631 Prasinoderma coloniale HOM05D003476 ORTHO05D004057 7.2e-08 60.5 79 46.8
Aa31LG9G9900 Aethionema arabicum HOM05D002056 ORTHO05D002289 9.4e-08 60.1 39 74.4
Sc09g0010500 Simmondsia chinensis HOM05D003476 ORTHO05D004057 2.1e-07 58.9 40 65.0
CDE04G3620 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 2.7e-07 58.5 36 77.8
CDE03G0334 Ceratophyllum demersum HOM05D003476 ORTHO05D004057 3.6e-07 58.2 37 75.7
FvH4_2g40940 Fragaria vesca HOM05D003476 ORTHO05D004057 8.0e-07 57.0 86 41.9
Medtr8g093950 Medicago truncatula HOM05D003476 ORTHO05D004057 8.0e-07 57.0 43 65.1
Sabra10G0148300 Salix brachista HOM05D003476 ORTHO05D004057 8.0e-07 57.0 35 74.3


User provided reference genes

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