Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 4.1e-136 488.0 244 100.0
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 1.1e-133 479.9 244 99.2
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 8.1e-132 473.8 244 98.0
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 8.1e-132 473.8 244 97.5
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.4e-130 468.4 244 96.7
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.6e-127 459.5 248 94.4
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 6.0e-127 457.6 248 94.0
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 3.3e-125 451.8 244 92.6
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 5.1e-110 401.4 244 83.6
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 2.8e-108 395.6 248 79.8
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 4.8e-108 394.8 246 80.9
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 9.0e-107 390.6 246 80.5
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 1.2e-106 390.2 245 80.0
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 3.4e-106 388.7 244 78.3
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 1.4e-104 383.3 244 77.5
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 1.4e-104 383.3 244 79.1
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 2.4e-104 382.5 247 81.4
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 4.2e-104 381.7 244 78.7
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 3.5e-103 378.6 244 76.6
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 1.0e-102 377.1 241 78.0
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 1.3e-102 376.7 240 77.5
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 6.7e-102 374.4 242 76.4
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 1.1e-101 373.6 244 77.0
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 3.3e-101 372.1 249 75.9
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 5.6e-101 371.3 245 74.3
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 1.6e-100 369.8 237 76.8
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 2.1e-100 369.4 244 75.8
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 2.8e-100 369.0 244 75.0
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 4.8e-100 368.2 244 77.0
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 8.1e-100 367.5 247 75.3
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 1.4e-99 366.7 239 76.6
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 3.1e-99 365.5 247 74.5
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 5.3e-99 364.8 245 73.9
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 5.3e-99 364.8 241 76.8
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 5.3e-99 364.8 242 76.0
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 3.4e-98 362.1 247 74.1
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 1.3e-97 360.1 237 76.8
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.9e-97 359.0 247 73.7
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 4.9e-97 358.2 234 75.6
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 8.4e-97 357.5 243 74.9
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 8.4e-97 357.5 221 79.6
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 1.1e-96 357.1 247 73.3
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 3.2e-96 355.5 241 75.1
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 9.3e-96 354.0 247 72.9
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 9.3e-96 354.0 229 76.0
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 2.1e-95 352.8 237 72.2
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 2.1e-95 352.8 229 75.1
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 3.5e-95 352.1 243 72.4
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 6.0e-95 351.3 234 73.5
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 1.0e-94 350.5 237 73.8
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 3.0e-94 349.0 241 72.2
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 3.9e-94 348.6 234 72.6
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 5.1e-94 348.2 218 78.9
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 6.7e-94 347.8 238 71.8
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 6.7e-94 347.8 234 73.1
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 1.9e-93 346.3 237 72.6
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 4.3e-93 345.1 306 60.5
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 4.3e-93 345.1 237 72.2
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 1.3e-92 343.6 238 73.1
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.6e-92 343.2 234 72.6
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 6.2e-92 341.3 230 74.8
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 1.1e-91 340.5 240 72.1
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 1.1e-91 340.5 245 70.6
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 2.4e-91 339.3 232 75.0
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 4.0e-91 338.6 237 71.3
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 4.0e-91 338.6 241 70.5
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 1.2e-90 337.0 220 75.9
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 1.2e-90 337.0 235 71.5
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 2.0e-90 336.3 218 75.7
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 2.6e-90 335.9 234 68.8
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 7.6e-90 334.3 235 71.1
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 2.2e-89 332.8 239 70.3
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 2.2e-89 332.8 239 70.3
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 2.9e-89 332.4 244 70.9
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 3.8e-89 332.0 237 70.0
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 3.8e-89 332.0 238 69.7
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 4.9e-89 331.6 231 71.4
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 4.9e-89 331.6 218 74.8
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 6.5e-89 331.3 232 72.4
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 8.4e-89 330.9 248 69.8
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 8.4e-89 330.9 236 69.5
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 8.4e-89 330.9 230 71.3
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 1.9e-88 329.7 220 75.0
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 1.9e-88 329.7 241 68.9
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 1.9e-88 329.7 241 68.9
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 3.2e-88 328.9 236 69.5
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 4.2e-88 328.6 229 72.5
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 2.7e-87 325.9 210 76.2
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 2.3e-86 322.8 211 74.4
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 2.3e-86 322.8 233 70.4
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 5.7e-85 318.2 199 77.9
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 5.7e-85 318.2 195 80.0
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 1.3e-84 317.0 195 80.5
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 2.2e-84 316.2 195 79.0
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 1.2e-82 310.5 230 64.3
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 5.9e-82 308.1 233 67.0
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.1e-80 303.9 206 72.8
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 2.1e-79 299.7 218 68.3
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 6.1e-79 298.1 231 63.2
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 6.1e-79 298.1 230 62.6
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 1.0e-78 297.4 199 75.4
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 2.2e-76 289.7 188 76.6
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 6.9e-75 284.6 240 60.8
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 2.7e-71 272.7 211 66.4
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 1.4e-70 270.4 194 66.0
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 1.4e-70 270.4 277 58.5
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 3.9e-70 268.9 205 68.8
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 1.1e-69 267.3 195 68.7
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 5.2e-62 241.9 241 52.3
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 2.6e-61 239.6 220 52.3
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.2e-58 230.7 144 77.8
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 5.9e-58 228.4 141 80.9
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 1.2e-55 220.7 229 50.7
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 8.0e-55 218.0 244 50.0
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 6.7e-54 214.9 176 59.1
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 1.8e-51 206.8 193 56.0
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 4.1e-51 205.7 128 78.1
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 7.3e-32 141.7 184 43.5
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.9e-27 127.1 90 70.0
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 3.5e-26 122.9 258 32.9
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 8.6e-25 118.2 208 36.5
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 6.8e-22 108.6 219 34.7
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 5.4e-19 99.0 184 37.5
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 2.1e-18 97.1 63 74.6
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 4.6e-18 95.9 49 91.8
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 4.7e-15 85.9 49 81.6
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 1.4e-06 57.8 34 70.6


User provided reference genes

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