Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.1e-59 230.7 126 100.0
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 2.3e-58 228.8 126 99.2
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-58 228.8 126 99.2
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.8e-58 227.3 126 98.4
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.5e-57 223.8 126 96.0
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-55 219.2 126 94.4
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 4.1e-55 218.0 126 94.4
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.1e-55 218.0 126 94.4
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-54 216.5 126 93.7
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 8.0e-51 203.8 126 85.7
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 2.0e-49 199.1 126 85.7
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-49 198.0 126 84.9
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-49 198.0 126 84.9
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.5e-49 197.2 126 84.9
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.7e-48 194.9 126 84.1
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-47 193.4 126 83.3
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 4.7e-43 177.9 126 82.5
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.6e-38 161.4 103 84.5
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 4.6e-38 161.4 127 74.0
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 4.6e-38 161.4 120 73.3
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 6.0e-38 161.0 120 73.3
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 1.0e-37 160.2 125 72.8
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 2.3e-37 159.1 124 75.0
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.0e-37 158.7 127 70.9
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 8.6e-37 157.1 124 70.2
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.5e-36 155.6 119 68.9
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 2.5e-36 155.6 125 70.4
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.3e-36 154.8 122 71.3
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.3e-36 154.8 124 71.0
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-35 153.3 124 66.9
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.6e-35 152.9 125 69.6
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 2.1e-35 152.5 126 70.6
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.1e-35 152.5 128 68.0
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 8.1e-35 150.6 122 68.9
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 8.1e-35 150.6 126 68.3
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.8e-34 149.4 125 69.6
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 2.3e-34 149.1 125 65.6
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 2.3e-34 149.1 125 70.4
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.0e-34 148.3 128 69.5
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.0e-34 148.3 122 68.0
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.0e-34 148.3 128 68.8
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.2e-34 147.9 126 68.3
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 6.8e-34 147.5 124 68.5
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.2e-33 146.7 124 66.9
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.5e-33 146.4 128 69.5
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.5e-33 146.4 125 67.2
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.0e-33 146.0 104 73.1
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 2.0e-33 146.0 125 65.6
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-33 146.0 122 68.0
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.0e-33 146.0 126 67.5
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 3.4e-33 145.2 119 68.1
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 4.4e-33 144.8 124 69.4
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.4e-33 144.8 126 69.0
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 7.6e-33 144.1 125 67.2
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 9.9e-33 143.7 121 66.1
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.3e-32 143.3 127 64.6
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.3e-32 143.3 126 69.0
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.3e-32 143.3 124 66.1
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.2e-32 142.5 125 64.8
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 3.7e-32 141.7 124 66.9
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 4.9e-32 141.4 124 65.3
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 6.4e-32 141.0 129 65.9
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 8.4e-32 140.6 124 62.9
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 8.4e-32 140.6 112 71.4
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.4e-31 139.8 124 64.5
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.4e-31 139.8 127 63.0
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.4e-31 139.8 126 65.1
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.9e-31 139.4 127 66.9
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 2.4e-31 139.0 126 64.3
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 2.4e-31 139.0 120 65.8
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 3.2e-31 138.7 124 66.9
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 3.2e-31 138.7 124 65.3
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.2e-31 138.7 126 69.8
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 4.1e-31 138.3 127 64.6
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 5.4e-31 137.9 125 62.4
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.6e-30 136.3 124 64.5
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.1e-30 136.0 125 66.4
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 2.7e-30 135.6 127 63.8
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 3.5e-30 135.2 126 66.7
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 3.5e-30 135.2 126 64.3
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 7.8e-30 134.0 127 62.2
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.0e-29 133.7 130 65.4
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.7e-29 132.9 125 61.6
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 3.0e-29 132.1 124 62.9
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 3.0e-29 132.1 125 58.4
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.9e-29 131.7 126 61.9
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 3.9e-29 131.7 105 65.7
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.9e-29 131.7 125 59.2
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 5.1e-29 131.3 94 78.7
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 6.6e-29 131.0 123 61.0
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 6.6e-29 131.0 123 61.0
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.5e-28 129.8 116 64.7
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.5e-28 129.8 125 58.4
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.5e-28 129.8 125 64.0
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.9e-28 129.4 127 63.8
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.9e-28 129.4 130 64.6
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.3e-28 128.6 126 60.3
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.3e-28 128.3 122 63.1
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 5.6e-28 127.9 126 63.5
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 7.3e-28 127.5 118 63.6
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 9.6e-28 127.1 125 59.2
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 9.6e-28 127.1 124 61.3
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 2.1e-27 125.9 125 61.6
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.1e-27 125.9 122 61.5
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 2.1e-27 125.9 124 58.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 6.2e-27 124.4 122 59.8
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 6.2e-27 124.4 125 60.0
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 8.1e-27 124.0 124 58.1
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 8.1e-27 124.0 127 59.8
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 8.1e-27 124.0 123 62.6
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 8.1e-27 124.0 132 56.8
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.4e-26 123.2 126 62.7
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.8e-26 122.9 130 59.2
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.8e-26 122.9 131 58.8
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 3.1e-26 122.1 128 61.7
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 3.1e-26 122.1 128 61.7
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.1e-26 122.1 109 64.2
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 4.0e-26 121.7 128 61.7
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 4.0e-26 121.7 128 61.7
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 4.0e-26 121.7 128 61.7
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 4.0e-26 121.7 125 59.2
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 5.2e-26 121.3 130 61.5
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 5.2e-26 121.3 126 62.7
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 6.8e-26 120.9 127 59.8
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 8.9e-26 120.6 126 61.1
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.2e-25 120.2 130 60.8
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 1.5e-25 119.8 130 60.8
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 59.4
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.5e-25 119.8 130 56.9
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 2.6e-25 119.0 124 58.9
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 3.4e-25 118.6 124 58.9
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 5.8e-25 117.9 126 54.8
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 7.6e-25 117.5 131 57.3
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 9.9e-25 117.1 125 58.4
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.3e-24 116.7 125 56.8
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.2e-24 115.9 126 57.1
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.2e-24 115.9 129 57.4
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.9e-24 115.5 123 60.2
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.4e-23 113.2 126 54.8
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 2.4e-23 112.5 127 55.9
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.4e-23 112.5 128 54.7
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 5.4e-23 111.3 126 53.2
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 9.3e-23 110.5 122 54.1
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 3.9e-21 105.1 121 57.0
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 6.6e-21 104.4 124 56.5
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.5e-20 102.4 125 52.8
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 2.1e-19 99.4 119 51.3
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 3.1e-18 95.5 114 50.0
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.2e-16 89.4 105 50.5
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 3.8e-16 88.6 124 46.8
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 8.4e-16 87.4 123 43.9
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.4e-15 85.9 80 62.5
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 5.4e-15 84.7 89 53.9
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.5e-14 82.0 123 40.7
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 3.5e-14 82.0 73 63.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 4.6e-14 81.6 52 80.8
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 4.6e-14 81.6 58 75.9
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 8.7e-13 77.4 120 42.5
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 4.3e-12 75.1 71 59.2
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 9.6e-12 73.9 109 47.7
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 6.2e-11 71.2 125 40.8
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 2.4e-10 69.3 125 39.2
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 2.4e-07 59.3 114 43.9
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 9.3e-07 57.4 79 46.8
SEGI_27588 Sequoiadendron giganteum HOM05D004388 ORTHO05D005106 7.9e-06 54.3 127 34.6


User provided reference genes

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