Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.4e-50 202.6 100 100.0
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.0e-32 143.3 102 75.5
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 3.5e-25 118.2 98 67.3
FAN22G0393 Fragaria x ananassa HOM05D023873 ORTHO05D201286 1.6e-22 109.4 115 54.8
FAN13G0519 Fragaria x ananassa HOM05D023873 ORTHO05D199550 5.8e-12 74.3 40 90.0
FAN13G2218 Fragaria x ananassa HOM05D023873 ORTHO05D211003 5.8e-12 74.3 40 90.0
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 1.9e-10 69.3 48 58.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 2.5e-10 68.9 48 60.4
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 4.2e-10 68.2 48 58.3
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 7.1e-10 67.4 46 63.0
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 7.1e-10 67.4 46 63.0
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 7.1e-10 67.4 43 67.4
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.2e-09 66.6 48 58.3
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 1.2e-09 66.6 48 56.2
FAN19G1439 Fragaria x ananassa HOM05D030717 ORTHO05D203322 1.2e-09 66.6 35 94.3
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.2e-09 66.6 48 58.3
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.6e-09 66.2 48 56.2
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.6e-09 66.2 48 56.2
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.6e-09 66.2 48 58.3
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.6e-09 66.2 48 58.3
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.6e-09 66.2 40 70.0
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.6e-09 66.2 48 58.3
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.6e-09 66.2 40 70.0
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.6e-09 66.2 40 70.0
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.1e-09 65.9 40 72.5
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 2.1e-09 65.9 50 58.0
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.7e-09 65.5 43 62.8
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.7e-09 65.5 43 62.8
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 2.7e-09 65.5 43 65.1
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 2.7e-09 65.5 48 56.2
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 3.5e-09 65.1 48 56.2
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 3.5e-09 65.1 48 56.2
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 4.6e-09 64.7 40 67.5
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 4.6e-09 64.7 48 54.2
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 6.0e-09 64.3 48 54.2
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 6.0e-09 64.3 40 67.5
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 6.0e-09 64.3 40 67.5
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 6.0e-09 64.3 48 56.2
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 6.0e-09 64.3 40 67.5
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 7.9e-09 63.9 40 65.0
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 7.9e-09 63.9 48 58.3
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 7.9e-09 63.9 48 58.3
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 7.9e-09 63.9 48 58.3
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 7.9e-09 63.9 48 56.2
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 7.9e-09 63.9 40 67.5
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 7.9e-09 63.9 48 58.3
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 7.9e-09 63.9 47 57.4
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 7.9e-09 63.9 48 52.1
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.0e-08 63.5 40 67.5
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.0e-08 63.5 48 56.2
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 1.0e-08 63.5 51 51.0
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.0e-08 63.5 48 56.2
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.0e-08 63.5 48 56.2
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.3e-08 63.2 40 62.5
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.3e-08 63.2 48 54.2
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.3e-08 63.2 40 67.5
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.8e-08 62.8 40 62.5
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 1.8e-08 62.8 43 60.5
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 1.8e-08 62.8 40 67.5
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.8e-08 62.8 40 70.0
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.8e-08 62.8 48 54.2
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.8e-08 62.8 40 67.5
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.8e-08 62.8 40 67.5
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 1.8e-08 62.8 40 67.5
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.8e-08 62.8 40 67.5
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.3e-08 62.4 48 54.2
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 2.3e-08 62.4 39 66.7
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.3e-08 62.4 48 56.2
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.3e-08 62.4 40 65.0
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 2.3e-08 62.4 40 65.0
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 3.0e-08 62.0 40 65.0
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 3.0e-08 62.0 51 58.8
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 3.9e-08 61.6 40 65.0
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 3.9e-08 61.6 40 65.0
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 3.9e-08 61.6 40 65.0
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 3.9e-08 61.6 40 65.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 3.9e-08 61.6 40 65.0
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 5.1e-08 61.2 40 65.0
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 5.1e-08 61.2 40 62.5
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 6.7e-08 60.8 43 60.5
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 6.7e-08 60.8 40 65.0
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 6.7e-08 60.8 40 65.0
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 6.7e-08 60.8 40 65.0
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 8.7e-08 60.5 40 62.5
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 8.7e-08 60.5 81 39.5
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 8.7e-08 60.5 48 52.1
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 8.7e-08 60.5 40 62.5
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 8.7e-08 60.5 40 65.0
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.1e-07 60.1 39 61.5
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 1.1e-07 60.1 40 65.0
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 1.5e-07 59.7 40 65.0
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 1.5e-07 59.7 40 65.0
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.5e-07 59.7 40 62.5
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.9e-07 59.3 43 58.1
FAN27G0413 Fragaria x ananassa HOM05D023873 ORTHO05D205818 1.9e-07 59.3 55 58.2
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.9e-07 59.3 40 60.0
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 1.9e-07 59.3 72 48.6
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 2.5e-07 58.9 39 64.1
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 2.5e-07 58.9 39 64.1
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 2.5e-07 58.9 40 60.0
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 2.5e-07 58.9 69 46.4
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 2.5e-07 58.9 40 62.5
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 2.5e-07 58.9 40 62.5
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 2.5e-07 58.9 71 43.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.3e-06 56.6 40 57.5
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 1.3e-06 56.6 40 57.5
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 1.3e-06 56.6 39 61.5
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 1.3e-06 56.6 40 57.5
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.3e-06 56.6 39 59.0
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 1.3e-06 56.6 40 57.5
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.8e-06 55.5 48 52.1
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 3.7e-06 55.1 40 57.5
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 3.7e-06 55.1 40 57.5
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 3.7e-06 55.1 40 57.5
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 8.2e-06 53.9 40 57.5
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 8.2e-06 53.9 71 42.3


User provided reference genes

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