Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.0e-163 577.0 288 100.0
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 4.5e-158 561.2 288 98.3
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.5e-158 561.2 285 99.3
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.6e-147 525.0 295 91.5
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 9.8e-145 516.9 296 90.9
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-139 500.0 334 80.8
FAN01G2602 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.3e-91 340.5 217 83.9
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 2.0e-49 200.3 292 45.9
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.5e-47 192.2 314 45.2
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 9.4e-47 191.4 315 46.3
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.1e-46 188.7 309 46.3
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.0e-45 188.0 322 45.0
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-41 174.5 312 43.9
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 1.6e-41 174.1 312 43.9
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 2.9e-32 143.3 317 35.3
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 4.3e-31 139.4 322 37.0
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 5.6e-31 139.0 321 37.7
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 3.6e-30 136.3 324 36.7
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 1.8e-29 134.0 308 35.7
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 6.8e-29 132.1 317 36.0
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 1.5e-28 131.0 324 36.1
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.0e-28 130.6 293 39.2
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 6.4e-27 125.6 328 33.5
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 1.4e-26 124.4 323 34.4
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 5.4e-26 122.5 306 37.3
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 2.0e-25 120.6 322 35.4
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 3.5e-25 119.8 324 35.5
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 4.6e-25 119.4 325 34.2
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 8.6e-24 115.2 314 34.7
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.6e-22 110.9 308 34.1
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 3.6e-22 109.8 321 32.4
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 4.7e-22 109.4 319 34.5
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 6.2e-22 109.0 312 35.9
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 1.0e-21 108.2 296 35.1
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 3.4e-20 103.2 300 33.3
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 9.8e-20 101.7 317 31.5
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 1.3e-19 101.3 291 32.6
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 2.2e-19 100.5 316 31.6
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 3.7e-19 99.8 313 34.2
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 4.9e-19 99.4 231 34.6
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 4.9e-19 99.4 298 33.9
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 1.9e-18 97.4 295 31.2
FvH4_7g14880 Fragaria vesca HOM05D006343 ORTHO05D005694 3.2e-18 96.7 288 33.7
FAN10G1634 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-18 96.7 287 33.8
FAN10G3360 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.2e-18 96.7 287 34.1
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 1.6e-17 94.4 298 32.2
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 7.8e-17 92.0 306 30.7
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 7.8e-17 92.0 290 34.8
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 1.3e-16 91.3 308 33.4
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 3.0e-16 90.1 312 29.2
FAN06G3127 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.6e-16 89.0 288 32.3
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 8.6e-16 88.6 312 30.8
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 8.6e-16 88.6 322 29.5
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 2.5e-15 87.0 315 31.1
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 4.3e-15 86.3 238 34.0
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 5.6e-15 85.9 323 30.7
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 1.6e-14 84.3 331 27.8
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 8.1e-14 82.0 328 29.9
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 1.1e-13 81.6 318 28.0
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.4e-13 81.3 300 31.3
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 2.3e-13 80.5 321 28.0
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 3.1e-13 80.1 312 31.4
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 4.0e-13 79.7 295 31.5
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 4.0e-13 79.7 325 30.2
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 4.0e-13 79.7 320 30.6
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 4.0e-13 79.7 307 30.6
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 4.0e-13 79.7 306 31.7
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 4.0e-13 79.7 304 32.6
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 5.2e-13 79.3 323 28.2
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 6.8e-13 79.0 294 31.3
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 8.9e-13 78.6 343 27.7
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 3.4e-12 76.6 246 29.7
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 3.4e-12 76.6 303 30.4
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 4.4e-12 76.3 324 28.7
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 9.8e-12 75.1 313 29.1
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 1.3e-11 74.7 311 29.6
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.2e-11 73.9 348 28.4
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 3.7e-11 73.2 332 26.5
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 8.3e-11 72.0 232 29.7
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 1.1e-10 71.6 354 27.7
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 1.9e-10 70.9 310 27.7
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 3.2e-10 70.1 329 27.4
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 4.1e-10 69.7 296 30.1
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 5.4e-10 69.3 326 28.2
FAN03G2349 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.1e-10 68.9 77 54.5
PSO478G0137 Papaver somniferum HOM05D020029 ORTHO05D005694 1.2e-09 68.2 214 30.8
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 2.7e-09 67.0 330 27.6
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.0e-08 65.1 299 28.8
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 1.3e-08 64.7 351 27.4
EL10Ac1g00388 Beta vulgaris HOM05D029301 ORTHO05D005694 1.7e-08 64.3 121 38.8
Actinidia10044 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.3e-08 63.9 102 44.1
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 2.3e-08 63.9 297 27.9
PSO782G1271 Papaver somniferum HOM05D020029 ORTHO05D005694 3.9e-08 63.2 192 27.6
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 5.1e-08 62.8 314 26.8
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 5.1e-08 62.8 300 28.0
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 8.6e-08 62.0 330 28.5
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 1.1e-07 61.6 247 26.7
PSO478G4526 Papaver somniferum HOM05D020029 ORTHO05D005694 1.5e-07 61.2 208 29.8
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 1.9e-07 60.8 317 25.9
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 1.9e-07 60.8 235 31.9
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 2.5e-07 60.5 290 27.9
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 3.3e-07 60.1 183 33.3
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 4.3e-07 59.7 294 28.9
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 5.6e-07 59.3 326 26.7
FAN06G3406 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.6e-07 59.3 100 39.0
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 1.6e-06 57.8 297 29.3
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 2.8e-06 57.0 298 29.2
Sc01g0003550 Simmondsia chinensis HOM05D006343 ORTHO05D005694 2.8e-06 57.0 293 27.6
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 3.6e-06 56.6 290 27.9
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 6.2e-06 55.8 310 28.1
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 6.2e-06 55.8 323 26.9
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 8.1e-06 55.5 261 27.2


User provided reference genes

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