Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 0.0e+00 1162.9 587 100.0
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 0.0e+00 1157.1 587 99.5
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 0.0e+00 1126.3 587 97.1
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 0.0e+00 1118.6 587 96.4
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 0.0e+00 1111.3 587 94.2
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.1e-291 1004.2 548 92.7
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.4e-269 931.4 590 79.0
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.7e-257 892.5 591 77.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 1.9e-240 835.9 600 70.8
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 2.9e-236 822.0 593 70.3
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 9.3e-235 817.0 593 69.8
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.5e-232 809.7 594 69.4
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 4.3e-232 808.1 595 69.9
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 1.2e-229 800.0 593 68.0
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 8.5e-228 793.9 593 67.5
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 3.2e-227 792.0 597 70.2
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 3.2e-227 792.0 597 68.5
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 3.2e-227 792.0 621 66.5
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 3.2e-227 792.0 593 68.3
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.4e-225 786.6 596 67.8
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 4.3e-224 781.6 595 66.2
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 9.7e-224 780.4 599 67.1
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.3e-223 780.0 598 67.1
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 1.3e-223 780.0 595 67.1
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 3.7e-223 778.5 593 66.3
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 6.3e-223 777.7 592 66.2
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 6.3e-223 777.7 594 67.2
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 9.1e-222 773.9 594 65.7
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.6e-221 772.3 596 65.4
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.3e-220 770.0 599 65.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.4e-219 766.5 592 66.6
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.4e-219 766.5 597 65.2
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.9e-219 766.1 597 66.5
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 7.2e-219 764.2 592 66.2
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 9.4e-219 763.8 597 64.8
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.1e-218 762.7 592 65.5
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 1.0e-217 760.4 593 64.6
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 3.0e-217 758.8 595 64.7
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 3.0e-217 758.8 596 63.9
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 6.7e-217 757.7 615 63.9
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.3e-216 755.4 671 60.4
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 7.4e-216 754.2 595 64.0
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 1.3e-215 753.4 665 59.4
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.2e-215 752.7 595 63.5
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 2.8e-215 752.3 593 63.4
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 4.1e-214 748.4 629 62.2
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 7.0e-214 747.7 596 63.8
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 2.6e-213 745.7 596 63.4
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 5.9e-213 744.6 594 63.5
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.7e-212 743.0 603 63.3
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.2e-212 742.7 592 64.4
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.2e-212 742.7 595 63.5
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 3.8e-212 741.9 595 63.5
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 8.5e-212 740.7 594 63.0
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 8.5e-212 740.7 593 63.4
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 2.5e-211 739.2 592 63.5
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 4.2e-211 738.4 600 62.8
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 5.5e-211 738.0 597 62.5
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 1.2e-210 736.9 603 62.9
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.1e-210 736.1 594 63.8
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 2.7e-210 735.7 598 63.7
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.0e-209 733.8 593 63.6
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 6.7e-209 731.1 591 63.1
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 6.7e-209 731.1 613 61.7
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.5e-208 729.9 590 62.0
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.6e-205 719.9 630 59.4
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 3.5e-205 718.8 600 62.7
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 3.8e-204 715.3 593 62.6
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 5.0e-204 714.9 609 60.8
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.5e-204 714.5 594 62.1
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 2.5e-203 712.6 596 62.2
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 5.5e-203 711.4 592 62.8
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.8e-201 706.4 595 60.3
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 5.2e-201 704.9 592 63.0
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 5.7e-200 701.4 595 59.8
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 7.5e-200 701.0 594 61.8
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 3.1e-198 695.7 591 60.6
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 3.5e-197 692.2 555 63.1
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.7e-196 689.9 532 66.4
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 3.8e-196 688.7 597 60.0
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 5.0e-196 688.3 591 58.9
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.1e-195 687.2 593 60.7
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 1.5e-195 686.8 595 59.8
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 5.5e-195 684.9 596 59.4
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 3.6e-194 682.2 594 59.9
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 4.7e-194 681.8 594 60.1
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 6.1e-194 681.4 598 58.9
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 8.0e-194 681.0 594 59.9
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 3.0e-193 679.1 594 59.6
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 1.7e-191 673.3 445 78.0
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.7e-191 673.3 597 59.0
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.7e-191 673.3 597 59.0
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 6.3e-191 671.4 559 61.0
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 1.1e-190 670.6 595 59.5
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.8e-190 669.8 503 68.4
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 7.2e-187 657.9 594 57.7
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 8.9e-185 651.0 595 57.1
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 6.6e-180 634.8 608 54.9
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.4e-177 627.1 580 58.1
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 1.2e-176 624.0 605 54.4
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 3.4e-176 622.5 592 54.4
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 2.3e-172 609.8 599 55.8
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 2.2e-159 566.6 525 57.3
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.9e-159 565.5 419 70.4
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.1e-158 564.3 526 57.0
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 9.2e-158 561.2 589 52.0
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 4.7e-154 548.9 522 56.1
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 1.7e-151 540.4 464 61.9
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 8.4e-151 538.1 617 48.1
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 8.7e-148 528.1 596 47.8
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 7.6e-144 515.0 549 53.7
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 3.8e-127 459.5 604 43.2
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.6e-125 454.1 395 59.0
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.9e-115 420.6 578 43.3
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 4.8e-114 416.0 410 60.0
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.9e-111 406.8 280 75.7
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 3.8e-111 406.4 616 39.0
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.9e-110 404.1 596 41.3
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.6e-107 393.7 304 64.5
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 7.2e-102 375.6 593 40.1
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 5.7e-99 365.9 623 37.9
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.1e-94 351.7 340 57.4
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 6.1e-93 345.9 248 69.0
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 5.9e-80 302.8 465 43.7
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.9e-71 273.9 250 60.0
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 3.3e-70 270.4 617 32.6
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.8e-69 267.3 426 41.8
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 8.0e-61 239.2 131 80.2
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 3.4e-59 233.8 282 46.8
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 3.0e-55 220.7 166 67.5
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.9e-55 220.3 287 48.1
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 5.6e-46 189.9 568 29.2
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 6.8e-44 183.0 130 59.2
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.1e-41 175.6 286 39.2
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 3.9e-39 167.2 133 62.4
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.9e-38 164.9 128 64.8
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 2.2e-34 151.4 386 32.9
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 8.4e-34 149.4 116 66.4
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 1.6e-29 135.2 94 64.9
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.2e-27 129.0 146 42.5
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 2.4e-25 121.3 130 47.7
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 4.0e-20 104.0 892 22.1
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.2e-18 98.2 81 63.0
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 6.7e-15 86.7 75 57.3
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 4.3e-14 84.0 88 46.6
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 2.1e-13 81.6 55 65.5
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 4.0e-12 77.4 42 76.2
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 4.0e-12 77.4 42 76.2
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.2e-11 75.9 108 42.6
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 2.0e-11 75.1 41 75.6
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 4.5e-11 73.9 131 37.4
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 4.5e-11 73.9 131 37.4
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 1.0e-10 72.8 41 73.2
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 3.8e-10 70.9 57 59.6
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 3.3e-06 57.8 35 82.9


User provided reference genes

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