Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1196.4 647 100.0
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 0.0e+00 1174.8 647 98.8
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1159.8 647 97.4
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1153.7 647 96.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1152.5 647 97.1
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1152.5 647 97.1
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1151.7 647 96.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1149.0 647 96.8
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 0.0e+00 1085.5 647 90.0
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.3e-248 863.2 647 72.6
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.9e-245 851.3 647 72.6
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.5e-233 812.4 647 66.8
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 3.1e-231 805.4 646 65.3
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 6.7e-226 787.7 637 66.4
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.0e-218 762.3 647 61.8
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.9e-218 761.9 653 61.3
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 3.9e-218 761.9 647 61.5
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 5.1e-218 761.5 648 63.3
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 8.8e-218 760.8 650 62.2
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.7e-216 755.4 649 60.6
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 2.0e-214 749.6 647 61.2
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 2.0e-214 749.6 647 61.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.1e-211 739.6 647 61.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 2.1e-211 739.6 646 61.8
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 3.9e-210 735.3 636 61.9
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.7e-208 729.9 647 60.1
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 2.4e-207 726.1 651 59.9
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 4.5e-206 721.8 649 60.6
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 4.5e-206 721.8 651 59.6
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.4e-199 700.3 649 58.4
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.4e-199 699.5 648 58.0
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-198 696.8 649 57.9
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 5.9e-198 694.9 652 58.6
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.9e-197 692.6 648 58.0
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 6.5e-197 691.4 648 57.6
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.2e-196 688.7 652 58.3
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.0e-195 684.5 616 60.2
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.0e-194 682.6 650 57.1
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.8e-192 676.0 651 58.1
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 4.1e-191 672.2 661 56.7
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 7.7e-190 667.9 647 56.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.2e-189 666.4 647 56.1
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 6.5e-189 664.8 661 56.3
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.9e-188 663.3 651 57.1
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 2.1e-187 659.8 677 55.1
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 6.1e-187 658.3 649 55.6
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 8.0e-187 657.9 643 57.2
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.4e-183 647.1 649 55.3
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.5e-182 642.5 666 53.9
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.5e-180 637.1 668 53.9
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.5e-180 636.3 644 54.7
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.5e-180 636.3 671 54.1
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.3e-180 636.0 652 53.5
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 2.1e-179 633.3 653 55.1
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.4e-178 630.6 647 53.9
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.8e-178 630.2 647 54.3
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.3e-178 629.8 647 53.5
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.2e-177 627.5 650 54.2
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.4e-177 625.9 668 52.5
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 4.4e-177 625.5 647 53.6
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 5.7e-177 625.2 650 54.0
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.9e-176 622.1 659 53.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.8e-175 620.2 647 53.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.2e-174 617.5 665 51.9
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 7.8e-174 614.8 659 53.6
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.0e-173 614.4 638 52.2
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.3e-173 613.2 649 53.0
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.9e-173 612.8 656 52.6
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 6.6e-173 611.7 669 52.8
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.6e-171 605.9 644 53.0
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 3.6e-171 605.9 644 52.8
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 6.4e-168 595.1 637 52.1
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 6.4e-168 595.1 639 52.7
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 8.3e-168 594.7 647 52.6
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 8.3e-168 594.7 647 52.1
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 8.3e-168 594.7 639 52.7
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 9.2e-167 591.3 648 52.6
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.6e-166 590.5 654 50.9
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.3e-165 586.6 652 51.4
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.1e-164 584.3 581 55.4
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 1.9e-164 583.6 660 53.0
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 3.3e-164 582.8 665 50.8
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.6e-163 580.5 662 51.4
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 2.9e-160 569.7 675 48.4
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-159 567.0 614 54.1
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 3.5e-158 562.8 673 47.8
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.7e-157 560.5 603 52.6
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 2.3e-157 560.1 642 49.7
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.8e-155 553.1 567 55.7
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 4.7e-155 552.4 654 49.1
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 6.8e-154 548.5 642 48.8
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 7.5e-153 545.0 667 48.1
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 6.4e-152 542.0 632 48.9
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 3.5e-150 536.2 626 51.0
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.3e-149 534.3 659 49.2
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 3.0e-149 533.1 646 48.8
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 7.3e-148 528.5 645 46.8
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 2.4e-146 523.5 629 50.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.7e-141 505.0 469 59.3
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 6.2e-139 498.8 673 45.8
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.1e-139 498.4 469 58.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 7.6e-137 491.9 444 59.9
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.9e-136 490.0 685 44.1
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 2.4e-135 486.9 677 43.4
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.9e-132 477.2 441 59.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 5.8e-129 465.7 647 42.0
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.7e-128 464.2 649 42.4
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 5.4e-127 459.1 513 49.3
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 9.6e-124 448.4 399 59.9
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 2.8e-123 446.8 430 56.3
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 8.1e-123 445.3 681 40.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.5e-116 423.7 640 44.1
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-106 390.6 645 41.1
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.4e-106 390.6 349 60.2
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 2.2e-104 384.0 648 39.0
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 5.5e-103 379.4 361 59.6
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.8e-98 364.4 632 39.7
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.5e-97 361.3 404 50.7
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 4.5e-97 359.8 632 39.4
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-95 355.1 636 39.5
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.9e-95 354.4 625 39.5
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 4.7e-94 349.7 636 39.2
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-92 343.6 624 38.9
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 3.7e-91 340.1 645 38.1
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 4.8e-91 339.7 626 39.0
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.2e-87 327.0 644 37.1
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.8e-83 313.2 627 37.8
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 6.3e-83 312.8 683 34.1
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.1e-82 310.1 627 37.3
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-76 290.4 563 37.3
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.1e-66 257.3 579 34.5
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-65 255.0 609 34.6
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 7.0e-50 203.0 652 28.1
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 4.6e-49 200.3 413 35.4
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 6.6e-48 196.4 329 40.1
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 7.5e-44 183.0 259 44.8
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 7.5e-44 183.0 186 54.3
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 3.5e-41 174.1 202 53.5
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-34 152.5 121 68.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.4e-34 152.1 115 66.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 4.1e-34 150.6 134 59.7
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 2.7e-33 147.9 153 51.6
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.1e-31 142.5 133 61.7
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.2e-30 139.0 90 75.6
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-29 134.8 108 64.8
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-26 125.2 94 67.0
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 7.1e-26 123.2 368 30.4
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 3.5e-25 120.9 94 63.8
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 7.8e-25 119.8 155 48.4
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-23 114.4 90 64.4
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 8.1e-22 109.8 66 78.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-21 108.2 90 62.2
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.0e-21 107.5 111 55.9
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-20 105.9 97 55.7
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 5.8e-20 103.6 181 37.0
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 3.8e-19 100.9 144 45.1
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 8.7e-16 89.7 85 52.9
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 8.7e-16 89.7 113 46.0
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.5e-15 88.2 156 41.7
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 9.6e-15 86.3 216 31.5
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.3e-14 85.9 70 60.0
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-13 82.4 241 31.1
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 9.0e-13 79.7 241 30.7
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 9.0e-13 79.7 241 30.7
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-10 71.6 279 26.2
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 2.4e-10 71.6 51 66.7
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 7.1e-10 70.1 96 42.7
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 9.3e-10 69.7 80 50.0
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 1.1e-07 62.8 121 38.0
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 2.5e-07 61.6 60 51.7
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 4.3e-07 60.8 68 48.5


User provided reference genes

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