Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4184 Fragaria x ananassa HOM05D003632 ORTHO05D005497 8.2e-177 624.4 540 100.0
FvH4_7g05210 Fragaria vesca HOM05D003632 ORTHO05D017240 3.2e-48 197.2 146 80.8
FAN26G0474 Fragaria x ananassa HOM05D003632 ORTHO05D017240 5.3e-35 153.3 135 68.9
FAN28G1390 Fragaria x ananassa HOM05D003632 ORTHO05D017240 5.9e-34 149.8 138 66.7
FvH4_1g30291 Fragaria vesca HOM05D003632 ORTHO05D005497 1.4e-27 128.6 116 67.2
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 1.4e-27 128.6 116 67.2
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-27 128.6 116 67.2
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-27 128.6 116 67.2
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-27 128.6 116 67.2
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 1.2e-26 125.6 116 65.5
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.7e-26 124.4 116 65.5
FAN28G2388 Fragaria x ananassa HOM05D003632 ORTHO05D017240 3.5e-26 124.0 180 49.4
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 7.7e-26 122.9 116 63.8
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 7.7e-26 122.9 116 63.8
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 6.5e-25 119.8 110 63.6
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 8.5e-25 119.4 116 62.1
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 1.1e-24 119.0 116 62.1
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 1.5e-24 118.6 116 62.1
FAN19G0570 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.9e-24 118.2 106 68.9
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 7.2e-24 116.3 119 59.7
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 7.2e-24 116.3 116 61.2
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 7.2e-24 116.3 110 61.8
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 9.4e-24 115.9 110 62.7
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 1.2e-23 115.5 116 61.2
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 1.2e-23 115.5 116 60.3
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 1.2e-23 115.5 110 61.8
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 1.6e-23 115.2 116 60.3
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 1.6e-23 115.2 110 61.8
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 2.1e-23 114.8 117 59.0
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 2.7e-23 114.4 117 59.0
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 2.7e-23 114.4 106 62.3
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 2.7e-23 114.4 110 60.9
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 4.7e-23 113.6 116 57.8
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 4.7e-23 113.6 116 59.5
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 6.1e-23 113.2 116 57.8
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 6.1e-23 113.2 110 60.0
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 8.0e-23 112.8 110 60.0
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 8.0e-23 112.8 110 60.0
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 1.0e-22 112.5 110 60.0
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 1.0e-22 112.5 117 56.4
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 1.0e-22 112.5 110 60.0
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 1.0e-22 112.5 109 61.5
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 1.4e-22 112.1 110 59.1
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 1.4e-22 112.1 110 60.0
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 1.4e-22 112.1 110 60.0
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 1.4e-22 112.1 110 60.0
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.4e-22 112.1 116 58.6
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.4e-22 112.1 116 58.6
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 1.4e-22 112.1 116 58.6
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 1.4e-22 112.1 110 60.9
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 1.8e-22 111.7 120 55.8
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 1.8e-22 111.7 116 57.8
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 2.3e-22 111.3 116 56.9
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 2.3e-22 111.3 110 60.0
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 2.3e-22 111.3 110 58.2
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 4.0e-22 110.5 110 58.2
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 4.0e-22 110.5 110 58.2
Os06g0625400 Oryza sativa ssp. japonica HOM05D003632 ORTHO05D005497 4.0e-22 110.5 116 60.3
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 4.0e-22 110.5 107 62.6
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 5.2e-22 110.2 133 51.9
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 5.2e-22 110.2 110 59.1
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 6.8e-22 109.8 116 56.0
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 8.8e-22 109.4 116 56.9
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 8.8e-22 109.4 118 57.6
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 8.8e-22 109.4 117 55.6
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 1.2e-21 109.0 110 58.2
FvH4_7g01540 Fragaria vesca HOM05D003632 ORTHO05D005497 1.2e-21 109.0 124 56.5
Nitab4.5_0002450g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 1.2e-21 109.0 111 59.5
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 1.2e-21 109.0 107 58.9
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 1.2e-21 109.0 110 60.0
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 1.5e-21 108.6 110 59.1
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 1.5e-21 108.6 110 59.1
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 1.5e-21 108.6 107 58.9
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 2.0e-21 108.2 116 56.0
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 2.0e-21 108.2 116 56.0
FAN26G0913 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.0e-21 108.2 146 51.4
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 2.0e-21 108.2 116 56.0
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 2.6e-21 107.8 107 60.7
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 2.6e-21 107.8 116 56.9
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 2.6e-21 107.8 116 56.9
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 2.6e-21 107.8 126 54.0
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 2.6e-21 107.8 110 58.2
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 3.4e-21 107.5 110 58.2
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 3.4e-21 107.5 116 56.0
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 3.4e-21 107.5 116 57.8
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 3.4e-21 107.5 107 59.8
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 3.4e-21 107.5 107 59.8
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 3.4e-21 107.5 107 59.8
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 4.4e-21 107.1 110 58.2
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 4.4e-21 107.1 116 55.2
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 4.4e-21 107.1 107 60.7
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 4.4e-21 107.1 151 51.0
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 5.7e-21 106.7 116 56.0
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 5.7e-21 106.7 116 55.2
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 5.7e-21 106.7 116 55.2
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 5.7e-21 106.7 116 55.2
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 5.7e-21 106.7 107 59.8
Lalb_Chr16g0376561 Lupinus albus HOM05D003632 ORTHO05D005497 5.7e-21 106.7 107 59.8
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 7.5e-21 106.3 116 54.3
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 7.5e-21 106.3 120 55.8
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 9.8e-21 105.9 121 53.7
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 9.8e-21 105.9 116 55.2
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 9.8e-21 105.9 125 55.2
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 1.3e-20 105.5 116 55.2
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 1.3e-20 105.5 116 55.2
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 1.3e-20 105.5 107 59.8
FvH4_1g28270 Fragaria vesca HOM05D003632 ORTHO05D005497 2.2e-20 104.8 131 55.7
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 2.8e-20 104.4 126 53.2
FAN10G0294 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.8e-20 104.4 140 52.9
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 4.8e-20 103.6 126 51.6
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 4.8e-20 103.6 121 52.1
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 4.8e-20 103.6 110 57.3
FAN06G3471 Fragaria x ananassa HOM05D003632 ORTHO05D017240 6.3e-20 103.2 100 64.0
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 6.3e-20 103.2 116 55.2
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 8.3e-20 102.8 70 84.3
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 8.3e-20 102.8 110 55.5
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 8.3e-20 102.8 110 55.5
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 1.8e-19 101.7 116 53.4
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 3.1e-19 100.9 107 57.0
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 4.1e-19 100.5 72 80.6
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 1.6e-18 98.6 108 58.3
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 1.6e-18 98.6 97 61.9
FvH4_7g02670 Fragaria vesca HOM05D003632 ORTHO05D017240 2.0e-18 98.2 77 75.3
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 2.0e-18 98.2 103 57.3
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 3.5e-18 97.4 108 56.5
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 3.5e-18 97.4 108 56.5
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 4.5e-18 97.1 111 56.8
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 5.9e-18 96.7 108 52.8
FAN23G2090 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.1e-16 92.4 131 49.6
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.9e-16 91.7 66 78.8
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 2.5e-16 91.3 125 47.2
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 9.5e-16 89.4 129 47.3
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 9.5e-16 89.4 126 46.0
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 1.0e-14 85.9 117 46.2
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 5.2e-14 83.6 70 65.7
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 2.0e-13 81.6 102 54.9
FAN28G0698 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.6e-13 81.3 76 67.1
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 8.3e-12 76.3 81 55.6
FAN03G2152 Fragaria x ananassa HOM05D003632 ORTHO05D005497 9.2e-11 72.8 83 56.6
FAN10G1660 Fragaria x ananassa HOM05D003632 ORTHO05D046112 2.0e-10 71.6 85 64.7
FAN27G3187 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.5e-10 70.9 109 50.5
FAN10G3171 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.9e-10 70.1 49 83.7
Cre17.g723250 Chlamydomonas reinhardtii HOM05D003632 ORTHO05D005497 5.6e-08 63.5 109 38.5
FvH4_7g00590 Fragaria vesca HOM05D003632 ORTHO05D046112 3.1e-06 57.8 56 58.9
FAN06G0859 Fragaria x ananassa HOM05D003632 ORTHO05D046128 3.1e-06 57.8 100 48.0


User provided reference genes

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