Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 8.5e-75 283.5 135 100.0
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.1e-73 278.9 133 99.2
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.0e-72 276.6 133 98.5
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.4e-72 276.2 133 97.7
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 4.4e-71 271.2 133 97.0
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 8.3e-62 240.4 134 79.1
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 1.1e-61 240.0 133 80.5
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 1.1e-61 240.0 133 78.9
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 1.8e-61 239.2 133 79.7
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 1.8e-61 239.2 133 78.9
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 1.8e-61 239.2 133 78.9
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 3.2e-61 238.4 133 78.9
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 1.2e-60 236.5 133 78.2
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 1.6e-60 236.1 133 78.9
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.7e-60 235.3 116 94.0
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 2.7e-60 235.3 133 78.9
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 2.7e-60 235.3 130 81.5
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 2.7e-60 235.3 133 78.2
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 2.7e-60 235.3 133 75.2
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 4.6e-60 234.6 133 78.9
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 5.9e-60 234.2 133 79.7
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 1.0e-59 233.4 133 81.2
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 1.7e-59 232.6 133 76.7
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.7e-59 232.6 133 75.9
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 3.9e-59 231.5 133 74.4
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 3.9e-59 231.5 133 79.7
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 8.6e-59 230.3 134 75.4
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 1.1e-58 229.9 133 75.9
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 1.1e-58 229.9 133 75.9
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 1.5e-58 229.6 134 73.9
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 1.9e-58 229.2 133 78.9
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 1.9e-58 229.2 134 76.9
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 1.9e-58 229.2 133 72.9
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 5.6e-58 227.6 134 75.4
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 5.6e-58 227.6 134 76.1
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 7.3e-58 227.3 134 75.4
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 9.5e-58 226.9 134 74.6
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 9.5e-58 226.9 134 74.6
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 9.5e-58 226.9 134 74.6
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 9.5e-58 226.9 134 75.4
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 1.6e-57 226.1 133 72.9
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 1.6e-57 226.1 133 72.9
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 2.1e-57 225.7 134 73.1
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 2.1e-57 225.7 133 76.7
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 2.8e-57 225.3 134 73.9
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 2.8e-57 225.3 133 77.4
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 2.8e-57 225.3 133 77.4
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 2.8e-57 225.3 134 71.6
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 4.7e-57 224.6 134 73.9
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 4.7e-57 224.6 134 73.9
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 6.2e-57 224.2 133 72.9
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 8.0e-57 223.8 133 77.4
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 1.8e-56 222.6 134 73.1
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 1.8e-56 222.6 133 72.2
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 1.8e-56 222.6 134 75.4
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 1.8e-56 222.6 140 73.6
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 2.3e-56 222.2 135 73.3
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 3.1e-56 221.9 133 71.4
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 4.0e-56 221.5 134 72.4
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 4.0e-56 221.5 133 76.7
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 4.0e-56 221.5 133 74.4
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 6.8e-56 220.7 133 73.7
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 8.9e-56 220.3 134 76.9
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 8.9e-56 220.3 133 72.9
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 8.9e-56 220.3 133 72.2
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 1.5e-55 219.5 133 75.9
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 1.5e-55 219.5 133 70.7
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 3.4e-55 218.4 133 69.9
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 4.4e-55 218.0 134 72.4
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 7.5e-55 217.2 133 69.2
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 1.3e-54 216.5 139 72.7
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 2.2e-54 215.7 133 70.7
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 2.2e-54 215.7 133 71.4
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 2.2e-54 215.7 139 71.9
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 3.7e-54 214.9 139 71.9
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 1.1e-53 213.4 133 69.2
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 1.1e-53 213.4 133 69.2
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 1.1e-53 213.4 133 69.2
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 1.1e-53 213.4 133 69.2
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.4e-53 213.0 133 69.2
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.4e-53 213.0 133 69.2
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 1.9e-53 212.6 133 68.4
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 1.9e-53 212.6 133 69.9
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 2.4e-53 212.2 139 69.1
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 3.2e-53 211.8 133 70.7
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 4.1e-53 211.5 133 70.7
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 5.4e-53 211.1 139 69.1
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 9.2e-53 210.3 133 70.7
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 1.2e-52 209.9 133 67.7
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 1.6e-52 209.5 133 69.2
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 3.5e-52 208.4 133 69.2
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 3.5e-52 208.4 133 69.9
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 3.5e-52 208.4 133 68.4
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 7.8e-52 207.2 133 66.9
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 9.5e-50 200.3 143 70.6
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 1.6e-49 199.5 134 68.7
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 2.1e-49 199.1 133 63.2
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 1.8e-48 196.1 133 63.9
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 2.3e-48 195.7 110 78.2
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 2.6e-47 192.2 133 62.4
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 2.6e-47 192.2 133 62.4
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 2.6e-47 192.2 133 60.9
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 3.4e-47 191.8 133 60.2
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 9.8e-47 190.3 132 63.6
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 1.3e-46 189.9 133 65.4
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 1.3e-46 189.9 133 63.9
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.2e-46 189.1 134 59.7
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 2.9e-46 188.7 131 64.9
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 2.9e-46 188.7 133 61.7
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 2.1e-44 182.6 135 62.2
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 2.1e-44 182.6 135 62.2
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 6.0e-44 181.0 133 66.2
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 7.8e-44 180.6 134 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 2.3e-43 179.1 134 59.7
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 3.0e-43 178.7 137 61.3
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 5.1e-43 177.9 133 60.2
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 1.5e-42 176.4 87 94.3
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 5.6e-42 174.5 133 60.9
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 2.8e-41 172.2 134 58.2
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 6.2e-41 171.0 101 77.2
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 3.1e-40 168.7 133 57.9
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 4.9e-38 161.4 133 57.9
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 6.4e-38 161.0 122 58.2
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 3.2e-37 158.7 133 57.1
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 2.1e-36 156.0 135 52.6
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 2.0e-31 139.4 134 47.0
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 2.9e-30 135.6 105 57.1
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 4.5e-23 111.7 87 57.5
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 7.6e-15 84.3 40 90.0
SMO195G0042 Selaginella moellendorffii HOM05D005894 ORTHO05D376219 2.2e-06 56.2 51 49.0


User provided reference genes

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